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Trans-dimensional Bayesian model averaging for $^{13}$C-based metabolic flux analysis: Evidence-based flux inference under structural model uncertainty2026 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Johann F. Jadebeck, Anton Stratmann, Martin Beyß, Katharina Nöh
0citations -
Trans-dimensional Bayesian model averaging for 13C-metabolic flux analysis: evidence-based flux inference under structural model uncertainty2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Johann F. Jadebeck, Anton Stratmann, Martin Beyß, Katharina Nöh
0citations -
A Genome-Scale Metabolic Model for the Smut-Fungus Ustilago maydis2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Ulf W. Liebal, Lena Ullmann, Christian Lieven, Philipp Kohl, Daniel Wibberg, Thiemo Zambanini, +1 more
1citations -
MEMOTE for standardized genome-scale metabolic model testing2020 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Christian Lieven, Moritz E. Beber, Brett G. Olivier, Frank Bergmann, Meriç Ataman, Parizad Babaei, +63 more
572citations -
Genome-scale metabolic network of human carotid plaque reveals the pivotal role of glutamine/glutamate metabolism in macrophage modulating plaque inflammation and vulnerability2024 Cardiovascular Diabetology article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Han Jin, Cheng Zhang, Jan Nagenborg, Peter J. Juhasz, Adele V. Ruder, Cornelis J. J. M. Sikkink, +8 more
20citations -
XomicsToModel: Omics data integration and generation of thermodynamically consistent metabolic models2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
German Preciat, Agnieszka B. Wegrzyn, Ines Thiele, Thomas Hankemeier, Ronan M. T. Fleming
10citations -
A recurrent neural network architecture to model physical activity energy expenditure in older people2022 Data Mining and Knowledge Discovery article Computer Science Context-Aware Activity Recognition Systems Open access
Stylianos Paraschiakos, Cláudio Rebelo de Sá, Jeremiah Okai, P. Eline Slagboom, Marian Beekman, Arno Knobbe
31citations -
Combining Knowledge About Metabolic Networks and Single-Cell Data with Maximum Entropy2025 conference-paper Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Carola Sophia Heinzel, Johann F. Jadebeck, Elisabeth Zelle, Johannes Seiffarth, Katharina Nöh
0citations -
Predicting metabolic preferences through transcriptomics: a data-driven approach to align metabolic signatures with gene expression profiles2025 Biochemistry and Biophysics Reports article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Lente J. S. Lerink, Marleen J de Winter, Ian P.J. Alwayn, Rutger J. Ploeg, John F. Mulvey, Jan H.N. Lindeman
1citations -
XomicsToModel: omics data integration and generation of thermodynamically consistent metabolic models2025 Nature Protocols article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
German Preciat, Agnieszka B. Wegrzyn, Xi Luo, Ines Thiele, Thomas Hankemeier, Ronan M. T. Fleming
15citations -
Processed transcriptomic dataset of human iPSC-derived dopaminergic neurons for constraint-based metabolic modeling0citations
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fluxTrAM: Integration of tracer-based metabolomics data into atomically resolved genome-scale metabolic networks for metabolic flux analysis2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Luojiao Huang, German Preciat, Jesús Alarcón-Gil, Edinson Lucumi Moreno, Agnieszka B. Wegrzyn, Ines Thiele, +4 more
1citations -
Pneumococcal Evasion of Antibiotics via Metabolic Adaptation During Infection2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Antibiotic Resistance in Bacteria Open access
Tina H. Dao, Haley Echlin, Abigail E. McKnight, Enolia S. Marr, Julia Junker, Qidong Jia, +2 more
1citations -
A unifying model to predict variable drug response for personalised medicine2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Pharmacogenetics and Drug Metabolism Open access
Maaike van der Lee, William G. Allard, Rolf H. A. M. Vossen, Renée F. Baak-Pablo, Roberta Menafra, Birgit A. L. M. Deiman, +8 more
15citations -
Modelling Circular Structures in Reaction Networks: Petri Nets and Reaction Network Flux Analysis2020 Computer-aided chemical engineering/Computer aided chemical engineering book-chapter Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction
Jana M. Weber, Artur M. Schweidtmann, Eduardo Nolasco, Alexei A. Lapkin
8citations -
Breathomics profiling of metabolic pathways affected by major depression: Possibilities and limitations2022 Frontiers in Psychiatry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Laila Gbaoui, Melanie Fachet, Marian Lüno, Gabriela Meyer-Lotz, Thomas Frodl, Christoph Hoeschen
11citations -
PlantMetWiki: a FAIR knowledge graph for plant metabolic pathway cross-species representation and integration2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Elena Del Pup, M Muller, Marvin Martens, Egon Willighagen, Marnix H. Medema, Denise Slenter, +1 more
0citations -
Context-dependent molecular responses to heterogeneous metabolic disease traits2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Theodora-Dafni Michalettou, Sapna Sharma, Natalie N. Atabaki, Juan J. Fernandez-Tajes, Mun‐Gwan Hong, Jonathan Adam, +34 more
0citations