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De novo whole genome assembly of the globally invasive green shore crab Carcinus maenas (Linnaeus, 1758) via long-read Oxford Nanopore MinION sequencing2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Jolanda K. Brons, Thomas Hackl, Riccardo Iacovelli, Kristina Haslinger, Sébastian Lequime, Sancia E. T. van der Meij
0citations -
A stepwise short- and long-read whole genome sequencing strategy resolves previous genetically unresolved inherited retinal disease cases2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Kim Rodenburg, Stefanida Shliaga, Lonneke Haer‐Wigman, Anneke T. Vulto‐van Silfhout, Erica G. M. Boonen, Lara K. Holtes, +24 more
0citations -
Analysis of variants in untranslated and promoter regions and breast cancer risk using whole genome sequencing data2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Naomi Wilcox, Jonathan P. Tyrer, Leila Dorling, Joe Dennis, Marc Naven, Mustapha Abubakar, +47 more
1citations -
Genome sequencing of the neotype strain CBS 554.65 reveals the MAT1-2 locus of Aspergillus niger2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Fungal and yeast genetics research Open access
Valeria Ellena, Sjoerd J. Seekles, Arthur F. J. Ram, Matthias G. Steiger
1citations -
Genome-wide methylation profiling of cell-free DNA in maternal plasma using Methylated DNA Sequencing (MeD-seq)2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Marjolein M. van Vliet, Ruben Boers, Joachim Boers, Olivier J. M. Schäffers, Lotte E. van der Meeren, Régine P.M. Steegers‐Theunissen, +2 more
0citations -
Whole genome sequencing of endometrial cancer identifies novel subgroups, drivers, and actionable alterations2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Sebastian Meyer, Ben Kinnersley, Katarzyna Kedzierska, Ignacio Soriano, Eszter Lakatos, Claudia Arnedo-Pac, +26 more
0citations -
The genome of the "Sea Vomit" Didemnum vexillum2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ernesto Parra-Rincón, Cristian A. Velandia-Huerto, Jörg Fallmann, Adriaan Gittenberger, Federico D. Brown, Peter Florian Stadler, +1 more
1citations -
Towards complete and error-free genome assemblies of all vertebrate species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Arang Rhie, Shane McCarthy, Olivier D. Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, +92 more
197citations -
Design and performance of a long-read sequencing panel for pharmacogenomics2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Pharmacogenetics and Drug Metabolism Open access
Maaike van der Lee, Loes Busscher, Roberta Menafra, Qinglian Zhai, Redmar R. van den Berg, Sarah B. Kingan, +6 more
2citations -
A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing2021 Genome Research preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, +4 more
96citations -
Insights from the first genome assembly of Onion ( Allium cepa )2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access
Richard Finkers, Martijn van Kaauwen, Kai Ament, Karin Burger-Meijer, Raymond Egging, Henk Huits, +7 more
6citations -
A Solanum lycopersicoides reference genome facilitates biological discovery in tomato2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access
Adrian F. Powell, Lance Courtney, Maximilian Schmidt, Ari Feder, Alexander Vogel, Yimin Xu, +18 more
9citations -
A Genome-Scale Metabolic Model for the Smut-Fungus Ustilago maydis2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Ulf W. Liebal, Lena Ullmann, Christian Lieven, Philipp Kohl, Daniel Wibberg, Thiemo Zambanini, +1 more
1citations -
Genome-enabled insights into the biology of thrips as crop pests2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Insect Resistance and Genetics Open access
Dorith Rotenberg, Aaron A. Baumann, Sulley K. Ben-Mahmoud, Olivier Christiaens, Wannes Dermauw, Panagiotis Ioannidis, +50 more
15citations -
Expanding the genome information on Bacillales for biosynthetic gene cluster discovery2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Lijie Song, Lasse Johan Dyrbye Nielsen, Xinming Xu, Omkar S. Mohite, Matin Nuhamunada, Zhihui Xu, +7 more
0citations -
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ann M. Mc Cartney, Giulio Formenti, Alice Mouton, Diego N. De Panis, Luísa S. Marins, Henrique G. Leitão, +93 more
15citations -
The fully resolved genome of Bacillus thuringiensis HER1410 reveals a cry -containing chromosome, two megaplasmids & an integrative plasmidial prophage2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Entomopathogenic Microorganisms in Pest Control Open access
Ana Lechuga, Cédric Lood, Margarita Salas, V. Vera van Noort, Rob Lavigne, Modesto Redrejo‐Rodríguez
0citations -
Benchmarking of shotgun sequencing depth highlights limitations of strain-level analysis and shallow metagenomics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Joana Séneca, Petra Pjevac, David Berry, John Penders
5citations