Papers matching “gene expression validation” 387
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Gene expression signatures in older patients with breast cancer: A systematic review2022 Critical Reviews in Oncology/Hematology review Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Annelieke A. Lemij, Joosje C. Baltussen, Nienke A. de Glas, Judith R. Kroep, Marloes G.M. Derks, Gerrit‐Jan Liefers, +1 more
9citations -
Validation of the association between MRI and gene signatures in facioscapulohumeral dystrophy muscle: implications for clinical trial design2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Chao-Jen Wong, Seth D. Friedman, Lauren D. Snider, Sean R. Bennett, Takako Iida Jones, Peter L. Jones, +10 more
2citations -
Rapid liquid biopsy assessment through gene profiling from the kidney biopsy transport medium: A technical validation and a proof-of-concept pilot study2026 American Journal of Transplantation article Medicine Renal Transplantation Outcomes and Treatments Open access
Ziyang Li, Marij J.P. Welters, Hailiang Mei, Alexis Varin, Baptiste Lamarthée, Aiko P. J. de Vries, +2 more
0citations -
Data from Gene Expression Profiling of Paraffin-Embedded Primary Melanoma Using the DASL Assay Identifies Increased Osteopontin Expression as Predictive of Reduced Relapse-Free Survival
Caroline Conway, Angana Mitra, Rosalyn Jewell, Juliette A. Randerson‐Moor, Samira Lobo, Sara Edward, +8 more
0citations -
Cell DiffErential Expression by Pooling (CellDEEP) highlights issues in differential gene expression in scRNA-seq2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia M Hardy, Andrew McCluskey, Thomas D. Otto, +1 more
0citations -
Rapid liquid biopsy assessment through gene profiling from the kidney biopsy transport medium: a technical validation and a proof-of-concept pilot study2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Molecular Biology Techniques and Applications Open access
Ziyang Li, Marij J.P. Welters, Baptiste Lamarthée, Aiko P. J. de Vries, Hans J. Baelde, Jesper Kers
0citations -
The human hepatocyte TXG-MAPr: gene co-expression network modules to support mechanism-based risk assessment2021 Archives of Toxicology article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Giulia Callegaro, Steven J. Kunnen, Panuwat Trairatphisan, Solène Grosdidier, Marije Niemeijer, Wouter den Hollander, +9 more
43citations -
Predictive gene expression profile for adjuvant taxane benefit in breast cancer in the MATADOR trial2024 iScience article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Mark Opdam, Annelot G.J. van Rossum, Marlous Hoogstraat, Gergana Bounova, Hugo M. Horlings, Erik D. van Werkhoven, +39 more
4citations -
Altered blood gene expression in the obesity-related type 2 diabetes cluster may be causally involved in lipid metabolism: a Mendelian randomisation study2023 Diabetologia article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Juliette A. de Klerk, Joline W. J. Beulens, Hailiang Mei, Roel Bijkerk, Anton Jan van Zonneveld, Robert Wilhelm Koivula, +3 more
39citations -
GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data2025 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
0citations -
GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
0citations -
Zero-Shot Metabolite Prediction from Gene Expression via Physics-Informed Graph Neural Networks2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Claudio Novella-Rausell, Ton J. Rabelink, Ahmed Essam Mahfouz
0citations -
Immune-related Gene Expression Predicts Response to Neoadjuvant Chemotherapy but not Additional Benefit from PD-L1 Inhibition in Women with Early Triple-negative Breast Cancer2021 Clinical Cancer Research article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies
Bruno Valentin Sinn, Sibylle Loibl, Claus Alexander Hanusch, Dirk-Michael Zahm, Hans‐Peter Sinn, Michael Untch, +16 more
46citations -
The heterogeneous sensitivity of pediatric brain tumors to different oncolytic viruses is predicted by unique gene expression profiles2024 Molecular Therapy Oncology article Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research Open access
Konstantinos Vazaios, Εftychia Stavrakaki, Lisette B. Vogelezang, Jie Ju, Piotr Waranecki, Dennis Serge Metselaar, +13 more
6citations -
Proton Pump Inhibitors Modulate Gene Expression Profile in Esophageal Mucosa and Microbiome2023 The Journal of Pediatric Pharmacology and Therapeutics article Medicine Gastroesophageal reflux and treatments Open access
Seesandra V. Rajagopala, Meghan H. Shilts, Hernán Correa, Suman R. Das, Yash A. Choksi, Justin Jacobse, +2 more
5citations -
Construction and Validation of a Prognostic Model Based on Pyroptosis-related Genes in Bladder Cancer2023 Combinatorial Chemistry & High Throughput Screening article Medicine Bladder and Urothelial Cancer Treatments
Chong Shen, Chenyang Han, Zhi Li, Yan Yan, Chenyun Li, Houyuan Chen, +2 more
2citations -
The Role of Macrophage Polarization-Associated Gene Expression in the Oncological Prognosis of Hepatocellular Carcinoma2024 Gastroenterology Insights article Immunology and Microbiology Immune cells in cancer Open access
Dong Liu, Yankun Li, Edgar Dahl, Tom Luedde, Ulf P. Neumann, Jan Bednarsch
2citations -
Integrative analysis of genomic amplification-dependent expression and loss-of-function screen identifies ASAP1 as a driver gene in triple-negative breast cancer progression2020 Oncogene article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Jichao He, Ronan P. McLaughlin, Lambert van der Beek, Sander Canisius, Lodewyk F.A. Wessels, Marcel Smid, +4 more
44citations -
Identification and Validation of Potentially Clinically Relevant CpG Regions within the Class 2 Tumor Suppressor Gene SFRP1 in Pancreatic Cancer2023 Cancers article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Maximilian Hauschulz, Sophia Villwock, Jennifer R. Kosinski, Florian Steib, Lara Rosaline Heij, Jan Bednarsch, +2 more
10citations