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GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
0citations -
Human AdV-20-42-42, a promising novel adenoviral vector for gene therapy and vaccine product development2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research Open access
Mónika Z. Ballmann, Svjetlana Raus, Ruben Engelhart, Győző L. Kaján, Chantal van der Zalm, Tibor Papp, +9 more
1citations -
GRAND: A database of gene regulatory network models across human conditions2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Camila M. Lopes‐Ramos, Deborah A. Weighill, Abhijeet R. Sonawane, Rebekka Burkholz, Behrouz Shamsaei, +4 more
8citations -
Genetic modulation of immune gene co-expression in the aged mouse hippocampus by the Apbb1ip locus2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroinflammation and Neurodegeneration Mechanisms Open access
James E. Tomkins, Aditi Methi, Gerard A. Bouland, Birte Doludda, Kitty B. Murphy, Jeremy A. Miller, +2 more
0citations -
Utilizing gene co-expression networks with the rat kidney TXG-MAPr tool to enhance safety assessment, biomarker identification and human translation2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Steven J. Kunnen, Giulia Callegaro, Jeffrey J. Sutherland, Panuwat Trairatphisan, Hugo W van Kessel, Lukas S. Wijaya, +11 more
1citations -
Mapping of the gene network that regulates glycan clock of ageing2023 medRxiv preprint Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Azra Frkatović-Hodžić, Karlo Miškec, Anika Mijakovac, Arina V. Nostaeva, Sodbo Sharapov, Arianna Landini, +34 more
4citations -
Distinct regulatory networks control toxin gene expression in elapid and viperid snakes2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Venomous Animal Envenomation and Studies Open access
Cassandra Marie Modahl, Summer Xia Han, Jory van Thiel, Candida Vaz, Nathan L. Dunstan, Seth E. Frietze, +3 more
2citations -
High sorbic acid resistance of Penicillium roqueforti is mediated by the SORBUS gene cluster2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Fungal and yeast genetics research Open access
Maarten Punt, Sjoerd J. Seekles, Jisca L. van Dam, Connor de Adelhart Toorop, Raithel R. Martina, Jos A. M. P. Houbraken, +3 more
2citations -
Integrating Gene Expression Analysis and Ecophysiological Responses to Water Deficit in Leaves of Tomato Plants2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Stress Responses and Tolerance Open access
Giovanni Bortolami, Tobias de Werk, Maximilian Larter, Ajaree Thonglim, Bernd Mueller‐Roeber, Salma Balazadeh, +1 more
1citations -
Comparison of Illumina Versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota2020 Preprints.org preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Astrid P. Heikema, Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia Hiltemann, Willem de Koning, +6 more
28citations -
A fungal plant pathogen overcomes mlo -mediated broad-spectrum disease resistance by rapid gene loss2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Powdery Mildew Fungal Diseases Open access
Stefan Kusch, Lamprinos Frantzeskakis, Birthe D. Lassen, Florian Kümmel, Lina Pesch, Mirna Barsoum, +2 more
2citations -
The plant longevity gene AHL15 delays leaf senescence by repressing ORESARA1 and cytokinin degradation2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Plant Gene Expression Analysis Open access
Thalia Luden, Petra Amakorová, Ondřej Novák, Salma Balazadeh, Remko Offringa
1citations -
Mismatch repair gene specifications to the ACMG/AMP classification criteria: Consensus recommendations from the InSiGHT ClinGen Hereditary Colorectal Cancer / Polyposis Variant Curation Expert Panel
John‐Paul Plazzer, Finlay Macrae, Xiaoyu Yin, Bryony A. Thompson, Susan Mary Farrington, Lauren B. Currie, +29 more
7citations -
Multi-ancestry genome-wide gene-sleep interactions identify novel loci for blood pressure2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Heming Wang, Raymond Noordam, Brian E. Cade, Karen Schwander, Thomas W. Winkler, Jiwon Lee, +90 more
3citations -
Sex-dependent gene regulation of human atherosclerotic plaques by DNA methylation and transcriptome integration points to smooth muscle cell involvement in women2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Robin J. G. Hartman, Marten A. Siemelink, Saskia Haitjema, Koen F. Dekkers, Lotte Slenders, Arjan Boltjes, +8 more
3citations -
A Large-Scale Genome-Wide Gene-Sleep Interaction Study in 732,564 Participants Identifies Lipid Loci Explaining Sleep-Associated Lipid Disturbances2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Raymond Noordam, Wenyi Wang, Pavithra Nagarajan, Heming Wang, Amy R. Bentley, Qin Hui, +91 more
1citations -
Characterization of widely conserved novel pigment production in Bacillus subtilis species2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Rune Overlund Stannius, Christopher A. Dunlap, Estelle Morvan, Mélanie Berbon, Sophie Lecomte, Antoine Loquet, +1 more
0citations -
A genome wide search for non-additive allele effects identifies PSKH2 as involved in the variability of Factor V activity2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Blood Coagulation and Thrombosis Mechanisms Open access
Blandine Gendre, Ángel Martínez-Pérez, Marcus Edi Kleber, Astrid van Hylckama Vlieg, Anne Boland, Robert Olaso, +12 more
0citations -
Correction for both common and rare cell types in blood is important to identify genes that correlate with age2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Damiano Pellegrino Coppola, Annique Claringbould, Maartje D. Stutvoet, Dorret Irene Boomsma, M. Arfan Ikram, P. Eline Slagboom, +2 more
1citations