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Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering2026 Nature Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jieran Sun, Kirti Biharie, Peiying Cai, Niklas Müller‐Bötticher, Paul Kießling, Meghan A. Turner, +47 more
5citations -
A configurable software platform for creating, reviewing and adjudicating annotation of unstructured text.2022 International Journal for Population Data Science article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Richard J Beare, Tanya Ravipati, Elizabeth Le, Taya Annabelle Collyer, Velandai K. Srikanth, Nadine E. Andrew
0citations -
P135: THE CLINGEN HEMOGLOBINOPATHY VARIANT CURATION EXPERT PANEL2022 HemaSphere article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Coralea Stephanou, Petros Kountouris, Carsten Werner Lederer, Celeste Bento, C Cornelis L Hartveld, J Jan Traeger-Synodinos, +22 more
0citations -
Validation of an automated AI-based micro-CT organ segmentation workflow against expert annotations and its impact on fluorescence quantification2026 European Radiology Experimental article Computer Science Medical Image Segmentation Techniques Open access
Elena Rama, Sihe Yu, Sarah Schraven, Zachary Gurberg, Ekaterina Savina, J Liu, +3 more
0citations -
LAMPA, LArge Multidomain Protein Annotator, and its application to RNA virus polyproteins2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Anastasia A. Gulyaeva, Andrey I Sigorskih, Elena S Ocheredko, Dmitry V. Samborskiy, Alexander E. Gorbalenya
14citations -
Curation and expansion of Human Phenotype Ontology for defined groups of inborn errors of immunity2021 Journal of Allergy and Clinical Immunology article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Matthias Haimel, Júlia Pázmándi, Raúl Jiménez Heredia, Jasmin Dmytrus, Sevgi Köstel Bal, Samaneh Zoghi, +32 more
33citations -
Identification of kidney cell types in scRNA-seq and snRNA-seq data using machine learning algorithms2024 Heliyon article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Adam Tisch, Siddharth Madapoosi, Stephen R. Blough, Jan Rosa, Sean F. Eddy, Laura H. Mariani, +9 more
3citations -
State of the Art Cell Detection in Bone Marrow Whole Slide Images2021 Journal of Pathology Informatics article Computer Science Digital Imaging for Blood Diseases Open access
Philipp Gräbel, Martina Margrit Crysandt, Reinhild Herwartz, Melanie Baumann, Barbara M. Klinkhammer, Peter Boor, +2 more
7citations -
Identification of Kidney Cell Types in Single-Cell RNA Sequencing and Single-Nucleus RNA Sequencing Data Using Machine-Learning Algorithms2024 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Siddharth Madapoosi, Adam Tisch, Jan Rosa, Sean F. Eddy, Abhijit S. Naik, Christine P. Limonte, +8 more
0citations -
Integrative Learning of Disentangled Representations from Single-Cell RNA-Sequencing Datasets2026 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
1citations