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scAGG: Sample-level embedding and classification of Alzheimer's disease from single-nucleus data2025 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Timo Verlaan, Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
4citations -
An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics2023 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Stavros Makrodimitris, Bram Pronk, Tamim Abdelaal, Marcel J. T. Reinders
12citations -
Stochastic neighbor embedding as a tool for visualizing the encoding capability of magnetic resonance fingerprinting dictionaries2021 Magnetic Resonance Materials in Physics Biology and Medicine article Medicine Advanced MRI Techniques and Applications Open access
Kirsten Koolstra, Peter Börnert, Boudewijn P. F. Lelieveldt, Oleh Dzyubachyk
4citations -
Unsupervised embedding of trajectories captures the latent structure of scientific migration2023 Proceedings of the National Academy of Sciences article Decision Sciences scientometrics and bibliometrics research Open access
Dakota Murray, Jisung Yoon, Sadamori Kojaku, Rodrigo Costas, Woo‐Sung Jung, Staša Milojević, +1 more
26citations -
Introducing a microstructure-embedded autoencoder approach for reconstructing high-resolution solution field data from a reduced parametric space2024 Computational Mechanics article Physics and Astronomy Model Reduction and Neural Networks Open access
Rasoul Najafi Koopas, Shahed Rezaei, Natalie Rauter, Richard Ostwald, Rolf Lammering
8citations -
Mid-IR cosmological spectrophotometric surveys from space: Measuring AGN and star formation at the cosmic noon with a SPICA-like mission2021 Publications of the Astronomical Society of Australia article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Laura Bisigello, F. J. Carrera, Asantha Roshan Cooray, Roberto Decarli, E. Hatziminaoglou, Alvaro Labiano, +3 more
7citations -
Contrastive learning of extragalactic stellar streams: Sculpting a latent space of representations with DES DR2 photometry2026 Astronomy and Astrophysics article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Ernesto Mújica Benítez, Jelle Mes, Juan Miró-Carretero, Konrad H. Kuijken, A. Helmi
1citations