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Towards a Simple and Extensible Standard for Object-Centric Event Data (OCED) -- Core Model, Design Space, and Lessons Learned2024 arXiv (Cornell University) preprint Business, Management and Accounting Business Process Modeling and Analysis Open access
Dirk Fahland, Marco Montali, Julian Lebherz, Wil M. P. van der Aalst, Maarten van Asseldonk, Lien Bosmans, +8 more
6citations -
Fast model-free standardization and integration of single-cell transcriptomics data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Rafael Kramann, Rachel Patton McCord, Sikander Hayat
0citations -
Reanalysis of whole-exome sequencing (WES) data of children with neurodevelopmental disorders in a standard patient care context2023 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Michelle van Slobbe, Arie van Haeringen, Lisenka E.L.M. Vissers, Emilia K. Bijlsma, Julie W. Rutten, Manon Suerink, +3 more
4citations -
Detection of Carbon Monoxide in the Atmosphere of WASP-39b Applying Standard Cross-Correlation Techniques to JWST NIRSpec G395H Data2023 arXiv (Cornell University) preprint Physics and Astronomy Stellar, planetary, and galactic studies Open access
E. Esparza-Borges, Mercedes López‐Morales, Jéa I. Adams Redai, Ε. Πάλλη, James A. Kirk, N. Casasayas-Barris, +27 more
1citations -
Semantic modelling of Common Data Elements for Rare Disease registries, and a prototype workflow for their deployment over registry data2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, +12 more
9citations -
Data Harmonization and Federated Learning for Multi-Cohort Dementia Research Using the OMOP Common Data Model: A Netherlands Consortium of Dementia Cohorts Case Study2024 SSRN Electronic Journal preprint Computer Science Privacy-Preserving Technologies in Data Open access
Pedro da Costa Mateus, Justine E. F. Moonen, Magdalena Beran, Eva A. Jaarsma, Sophie M. van der Landen, Joost Heuvelink, +10 more
0citations -
The GA4GH Phenopacket schema: A computable representation of clinical data for precision medicine2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Julius O.B. Jacobsen, Michael Baudis, Gareth S Baynam, J. Beckmann, Sergi Beltrán, Tiffany J. Callahan, +41 more
14citations -
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
David Bouyssié, Pınar Altıner, Salvador Capella-Gutiérrez, José M. Fernández, Yanick Paco Hagemeijer, Peter L. Horvatovich, +12 more
2citations -
MACA: Marker-based automatic cell-type annotation for single cell expression data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Simon J. Baumgart, Christian M. Stegmann, Sikander Hayat
2citations -
On the benchmarking of clustering algorithms and hyperparameter influence for cell type detection in single-cell RNA sequencing data2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Aleksandra Szmigiel, Ivan G. Costa, Ricardo J. G. B. Campello
1citations