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Human pluripotent stem cell-derived cardiomyocytes align under cyclic strain when guided by cardiac fibroblasts2022 APL Bioengineering article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Dylan Mostert, Bart G. W. Groenen, Leda Klouda, Robert C. J. J. Passier, Marie‐José Goumans, Nicholas A. Kurniawan, +1 more
14citations -
Analysis of flow-induced transcriptional response and cell alignment of different sources of endothelial cells used in vascular tissue engineering2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Diana M. Rojas‐González, Aaron Babendreyer, Andreas Ludwig, Petra Mela
15citations -
scTopoGAN: unsupervised manifold alignment of single-cell data2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Akash Kumar Singh, Kirti Biharie, Marcel J. T. Reinders, Ahmed Essam Mahfouz, Tamim Abdelaal
6citations -
scDecorr: feature decorrelation based representation learning enables self-supervised alignment of multiple single-cell experiments2026 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ritabrata Sanyal, Yang Xu, Hyojin Kim, Rafael Kramann, Sikander Hayat
0citations -
scDecorr: feature decorrelation based representation learning enables self-supervised alignment of multiple single-cell experiments2026 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ritabrata Sanyal, Hyojin Kim, Rafael Kramann, Sikander Hayat
0citations -
How cells align to structured collagen fibrils: a hybrid cellular Potts and molecular dynamics model with dynamic mechanosensitive focal adhesions7citations
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Eumelanin‐Coated Aligned PLA Electrospun Microfibers to Guide SH‐SY5YCells Spreading, Alignment, And Maturation2023 Advanced Materials Interfaces article Materials Science Electrospun Nanofibers in Biomedical Applications Open access
Anna Mariano, Ines Fasolino, Nikita Bhupesh Dinger, Claudia Latte Bovio, Irene Bonadies, Alessandro Pezzella, +3 more
5citations -
Engineering Anisotropic Cell Models: Development of Collagen Hydrogel Scaffolds with Magneto‐Responsive PEG Microgels for Tissue Engineering Applications2024 Advanced Materials Technologies article Biochemistry, Genetics and Molecular Biology Hydrogels: synthesis, properties, applications Open access
Ana L. Castro, Sitara Vedaraman, Tamás Haraszti, Mário Adolfo Barbosa, Raquel Madeira Gonçalves, Laura De Laporte
23citations -
Comparing individual-based models of collective cell motion in a benchmark flow geometry2023 Soft Matter article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Carine P. Beatrici, Cassio A. Kirch, Silke Henkes, François Graner, Leonardo G. Brunnet
12citations -
Steering cell orientation through light-based spatiotemporal modulation of the mechanical environment2024 Biofabrication article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Ignasi Jorba, Sil Gussenhoven, Atze van der Pol, Bart G. W. Groenen, Maarten van Zon, Marie‐José Goumans, +3 more
9citations -
Exploring the link between disturbed flow and endothelial cell function in an in vitro arteriovenous fistula model2026 Acta Biomaterialia article Health Professions Central Venous Catheters and Hemodialysis Open access
Zhuotao Xiao, Nicholas A. White, Jun Wen, Rudmer J. Postma, Wendy M.P.J. Sol, Bernard M. van den Berg, +5 more
0citations -
Software Tool for Automatic Quantification of Sarcomere Length and Organization in Fixed and Live 2D and 3D Muscle Cell Cultures In Vitro2022 Current Protocols article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Jeroen M. Stein, Ulgu Arslan, Marnix Franken, Jessica C. de Greef, Siân E. Harding, Neda Mohammadi, +4 more
34citations -
Cyclic Stretching Triggers Cell Orientation and Extracellular Matrix Remodeling in a Periodontal Ligament 3D In Vitro Model2023 Advanced Healthcare Materials article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Kuo‐Hui Chiu, Mert Karpat, Johannes Hahn, Kao‐Yuan Chang, Michael H. Weber, Michael F. Wolf, +2 more
22citations -
Image-guided alignment of consecutive multi-modal tissue slides2026 Cell Reports Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Benedetta Manzato, Claudio Novella-Rausell, Gangqi Wang, Nina Ogrinc, Rosalie G. J. Rietjens, Marleen E Jacobs, +3 more
0citations -
Cell-type-specific damage scores reveal kidney and liver disease trajectories in single-cell and spatial transcriptomics2026 Cell Genomics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tsimafei Padvitski, Paula Unger Avila, He Chen, Cem Özel, Fabian Braun, Marie-Kristin Kroll, +16 more
1citations