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The Impact of Digital Histopathology Batch Effect on Deep Learning Model Accuracy and Bias2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Frederick Matthew Howard, James M. Dolezal, Sara E. Kochanny, Jefree J. Schulte, Heather Chen, Lara Rosaline Heij, +7 more
25citations -
scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments0citations
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Multicenter self-supervised computational pathology identifies prognostic histomorphological phenotypes in colorectal cancer2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Floor Heilijgers, Hortense Le, Nicolas Coudray, Afreen Karimkhan, Derek Chen, Koen C.M.J. Peeters, +3 more
0citations -
mzQuality: A tool for quality monitoring and reporting of targeted mass spectrometry measurements2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Marielle van der Peet, Pascal Maas, Agnieszka B. Wegrzyn, Lieke Lamont, Ronan M. T. Fleming, Amy C. Harms, +2 more
5citations -
PILOT-GM-VAE: Patient-Level Analysis of single cell Disease Atlas with Optimal Transport of Gaussian Mixture Variational Autoencoders2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, James Shiniti Nagai, Tiago Maié, Christoph Kuppe, Ivan G. Costa
0citations -
Integrative learning of disentangled representations from single-cell RNA-sequencing datasets2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
0citations -
Atlas-scale spatially aware clustering with support for 3D and multimodal data using SpatialLeiden2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Niklas Müller‐Bötticher, Alexander Malt, Paul Kießling, Roland Eils, Christoph Kuppe, Naveed Ishaque
0citations -
Live-cell imaging enables reporter-free monitoring of the circadian rhythm in individual Synechocystis cells2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Circadian rhythm and melatonin Open access
Lennart Witting, Florian Pascal Stirba, Julius Nohr, Petra Kolkhof, Dietrich Kohlheyer, Anika Wiegard, +1 more
0citations -
Integrated Continuous Biomanufacturing of Recombinant Adeno-Associated Virus2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research Open access
Ralf Plieninger, Julia M Mueller, Daniela Tobler, Efe Saygili, Patrick Werder, Ryosuke Takahashi, +4 more
0citations -
Bayesian calibration, process modeling and uncertainty quantification in biotechnology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Gaussian Processes and Bayesian Inference Open access
Laura M. Helleckes, Michael Osthege, Wolfgang Wiechert, Eric von Lieres, Marco Oldiges
4citations -
A Genome-Scale Metabolic Model for the Smut-Fungus Ustilago maydis2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Ulf W. Liebal, Lena Ullmann, Christian Lieven, Philipp Kohl, Daniel Wibberg, Thiemo Zambanini, +1 more
1citations -
The Interplay Between High-Level Problems and The Process Instances That Give Rise To Them2023 arXiv (Cornell University) preprint Business, Management and Accounting Business Process Modeling and Analysis Open access
Bianka Bakullari, Jules van Thoor, Dirk Fahland, Wil M. P. van der Aalst
0citations -
SysQuan: repurposing SILAC mice for the affordable absolute quantitation of the human proteome2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications
Yassene Mohammed, Vincent R. Richard, M. Immanuel Reyes Madlangsakay, Ying Lao, Victor Spicer, Claudia Gaither, +4 more
0citations