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Could this be next for corpus linguistics? Methods of semi-automatic data annotation with contextualized word embeddings2024 Linguistics Vanguard article Computer Science Natural Language Processing Techniques Open access
Lauren Fonteyn, Enrique Manjavacas, Nina Haket, Aletta G. Dorst, Eva Kruijt
6citations -
Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 1 patent
Felix Stiehler, Marvin Steinborn, Daniela Dey, Andreas P.M. Weber, Alisandra K. Denton
179citations -
Towards a resource for multilingual lexicons: an MT assisted and human-in-the-loop multilingual parallel corpus with multi-word expression annotation2026 Language Resources and Evaluation article Computer Science Natural Language Processing Techniques Open access
Lifeng Han, Najet Hadj Mohamed, Malak Rassem, Gareth J. F. Jones, Alan F. Smeaton, Goran Nenadić
0citations -
Capillary Electrophoresis-Mass Spectrometry at Trial by Metabo-Ring: Effective Electrophoretic Mobility for Reproducible and Robust Compound Annotation2020 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Nicolas Drouin, Marlien van Mever, Wei Zhang, Elena Tobolkina, Sabrina Ferré, Anne‐Catherine Servais, +39 more
73citations -
Systematic comparison of temporal hepatotoxicant-induced gene network responses across 3 liver test systems2026 Toxicological Sciences article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Tamara Y Danilyuk, Marou Schouten, Elsje J Burgers, Barira Islam, Joost B. Beltman, Peter Bouwman, +2 more
0citations -
A comparison of traditional, complementary, and integrative medicine preprints and their corresponding journal articles: a protocol for a historical cohort study2026 European Journal of Integrative Medicine article Decision Sciences Academic Publishing and Open Access Open access
Jeremy Y. Ng, Brenda X. Lin, Sabrina Abdella, Isabella Tao, L.M. Bouter, Ludo Waltman, +1 more
0citations -
Deep learning segmentation model for quantification of infarct size in pigs with myocardial ischemia/reperfusion2024 Basic Research in Cardiology article Computer Science Medical Image Segmentation Techniques Open access
Felix Braczko, Andreas Skyschally, Helmut Raphael Lieder, Jakob Nikolas Kather, Petra Kleinbongard, Gerd Heusch
2citations -
Integrative Learning of Disentangled Representations from Single-Cell RNA-Sequencing Datasets2026 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
1citations -
From Mythology to Methodology: Untargeted Single-Cell Metabolomics in R with MeDUSA2026 Journal of the American Society for Mass Spectrometry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies
Laura Ann Castaneda, Eric Hetzel, Fercan Gül, Thomas Hankemeier
0citations -
Multilaboratory Untargeted Mass Spectrometry Metabolomics Collaboration to Identify Bottlenecks and Comprehensively Annotate A Single Dataset2025 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Joëlle Houriet, Preston K. Manwill, Armando Alcázar Magaña, Victoria M. Anderson, Mehdi A. Beniddir, Samuel Bertrand, +18 more
16citations -
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows2023 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
David Bouyssié, Pınar Altıner, Salvador Capella-Gutiérrez, José M. Fernández, Yanick Paco Hagemeijer, Peter L. Horvatovich, +13 more
4citations -
A graph-based approach to variant description extraction from sequences2025 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Mark Santcroos, Walter A. Kosters, Mihai Lefter, Jeroen F. J. Laros, Jonathan K. Vis
0citations