Papers matching “amplicon sequence variants” 29
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Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2021 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Sandra Reitmeier, Thomas C. A. Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, +5 more
0citations -
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2021 ISME Communications article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Sandra Reitmeier, Thomas C. A. Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, +5 more
181citations -
The influence of intraspecific sequence variation during DNA metabarcoding: A case study of eleven fungal species2021 Molecular Ecology Resources article Environmental Science Environmental DNA in Biodiversity Studies Open access
Eva Lena F. Estensmo, Sundy Maurice, Luís Neves Morgado, Pedro Maria Martin-Sanchez, Inger Skrede, Håvard Kauserud
80citations -
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2020 Research Square preprint Environmental Science Microbial Community Ecology and Physiology Open access
Sandra Reitmeier, Thomas CA Hitch, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, Klaus Neuhaus, +4 more
8citations -
Handling of Spurious Sequences Affects the Outcome of High-Throughput 16S rRNA Gene Amplicon Profiling2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Thomas Clavel, Sandra Reitmeier, Thomas CA Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, +5 more
7citations -
Multicenter In-House Evaluation of an Amplicon-Based Next−Generation Sequencing Panel for Comprehensive Molecular Profiling2025 Molecular Diagnosis & Therapy article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Eloisa Jantus Lewintre, Alessandra Rappa, Dina Ruano, Demi van Egmond, Sandra Gallach, Dilce Gozuyasli, +7 more
6citations -
Profiling of the tumor-associated microbiome in patients with hepatocellular carcinoma2025 Gut Pathogens article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Ramiro Vilchez‐Vargas, Elif Öcal, Nadine Koch, Daniel Puhr‐Westerheide, Lu Fornés Burnell, Heidrun Hirner-Eppeneder, +9 more
6citations -
Bacterial and fungal metabarcoding data characterizing within-canopy and within-leaf microbiota variations of three beech trees (Fagus Sylvatica) and their surrounding environment during the vegetative season of 2017.2022 Harvard Dataverse dataset Environmental Science Microbial Community Ecology and Physiology Open access
Tania Fort, Charlie Pauvert, Émilie Chancerel, Régis Burlett, Lisa Wingate, Corinne Vacher
0citations -
Successive plant growth amplifies genotype-specific assembly of the tomato rhizosphere microbiome2021 The Science of The Total Environment article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Viviane Cordovez, Cristina Rotoni, Francisco Dini‐Andreote, Ben O. Oyserman, Víctor J. Carrión, Jos M. Raaijmakers
93citations -
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny2026 Nature Methods article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Gillian Rodger, Sheila Lumley, Hermione J. Webster, Maija Lappalainen, Gavin Robert Screaton, Teemu Smura, +1 more
19citations -
Long-term wastewater monitoring of SARS-CoV-2 viral loads and variants at the major international passenger hub Amsterdam Schiphol Airport: a valuable addition to COVID-19 surveillance2024 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine SARS-CoV-2 detection and testing Open access
Anne-Merel R. van der Drift, Auke Haver, Astrid Kloosterman, Rudolf F.H.J. van der Beek, Erwin Nagelkerke, Jeroen F. J. Laros, +3 more
0citations -
Long-term wastewater monitoring of SARS-CoV-2 viral loads and variants at the major international passenger hub Amsterdam Schiphol Airport: a valuable addition to COVID-19 surveillance2023 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine SARS-CoV-2 detection and testing Open access
Anne-Merel R. van der Drift, Auke Haver, Astrid Kloosterman, Rudolf F.H.J. van der Beek, Erwin Nagelkerke, Jeroen F. J. Laros, +4 more
0citations -
Frequency of KCNQ1 variants causing loss of methylation of Imprinting Centre 2 in Beckwith-Wiedemann syndrome2020 Clinical Epigenetics article Biochemistry, Genetics and Molecular Biology Genetic Syndromes and Imprinting Open access
Carla Eßinger, Stephanie Karch, Ute Moog, György Fekete, Anna Lengyel, Éva Pinti, +2 more
17citations -
Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Antimicrobial Resistance in Staphylococcus Open access
Abraham G Moller, Robert A. Petit, Michelle H. Davis, Timothy D. Read
0citations -
Deep-amplicon sequencing of the complete beta-tubulin gene in Trichuris trichiura before and after albendazole treatment2024 International Journal for Parasitology Drugs and Drug Resistance article Immunology and Microbiology Parasites and Host Interactions Open access
Javier Gandasegui, Berta Grau-Pujol, Valdemiro Novela, Osvaldo Muchisse, María Cambra-Pellejà, Anélsio Cossa, +9 more
3citations -
Testing repeatability, testing repeatability, testing repeatability: harmonization of the DNA metabarcoding protocol for macrobenthos across Europe2021 ARPHA Conference Abstracts conference-paper Environmental Science Environmental DNA in Biodiversity Studies Open access
Laure Van den Bulcke, Annelies De Backer, Magdalini Christodoulou, Sahar Khodami, Sara Maes, Pedro Martínez Arbizu, +4 more
0citations -
Targeted VNTR long read sequencing resolves a diagnostic bottleneck in ADTKD and detects de novo ADTKD-MUC12026 Kidney International article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Andrea Wenzel, Björn Reusch, Karl Xaver Knaup, Nikola Zagorec, Margareta Fištrek Prlić, Kerstin Becker, +8 more
1citations -
A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-22023 European Journal of Clinical Microbiology & Infectious Diseases article Medicine SARS-CoV-2 detection and testing Open access
Ellen C. Carbo, Kees Mourik, Stefan A. Boers, Bas B. Oude Munnink, David F. Nieuwenhuijse, Marcel Jonges, +10 more
33citations -
Prospecting microbiota of Adriatic fish: Bacillus velezensis as a potential probiotic candidate2025 Animal Microbiome article Immunology and Microbiology Aquaculture disease management and microbiota Open access
Jerko Hrabar, Ivana Babić, Slaven Jozić, Željka Trumbić, Adele Pioppi, Lasse Johan Dyrbye Nielsen, +4 more
5citations -
Sponges from Lembeh Strait: antimicrobial activity and prokaryotic diversity2025 Journal of Applied Microbiology article Biochemistry, Genetics and Molecular Biology Marine Sponges and Natural Products Open access
Akhirta Atikana, Johanna Gutleben, Nicole Joy de Voogd, Tjalling Tjalsma, Shan Li Nio, Anak Agung Gede Indraningrat, +4 more
4citations -
Expansion of shrubs could result in local loss of soil bacterial richness in Western Greenland2020 FEMS Microbiology Ecology article Environmental Science Microbial Community Ecology and Physiology
Fabiana Canini, Laura Zucconi, Claudia Coleine, Federica D’Alò, Silvano Onofri, József Geml
8citations