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OmniPath: integrated knowledgebase for multi-omics analysis2025 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli, +25 more
23citations -
OmniPath: integrated knowledgebase for multi-omics analysis2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli, +25 more
0citations -
Immunomodulatory endothelial cells contribute to T cell recruitment and activation through antigen presentation on MHC class II2026 dissertation Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Matteo Cartura, Blerina Aliraj, Witold G. Szymanski, Giulio Ferrario, Flávia Rezende, Beyza Güven, +11 more
1citations -
Cell type matching across species using protein embeddings and transfer learning2023 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Cell type matching across species using protein embeddings and transfer learning2024 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts2022 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 2 patents
Andrea Hita, Gilles Brocart, Marc Rehmsmeier, Anna Alemany, Sol Schvartzman
17citations -
Heterogenous microglial reactivity contrasts with stable vascular transcriptional programs in mouse models of Alzheimer’s, CADASIL, and Traumatic Brain Injury2026 Nature Communications article Neuroscience Neuroinflammation and Neurodegeneration Mechanisms Open access
Katrine Dahl Bjørnholm, H. Li, G. Mocci, W. Shao, E. Baldisseri, S. B. Rao, +17 more
0citations -
Assembly and Quantification of Co-Cultures Combining Heterotrophic Yeast with Phototrophic Sugar-Secreting Cyanobacteria2024 Journal of Visualized Experiments article Energy Algal biology and biofuel production Open access
Dennis Hasenklever, Joana Charlot Pohlentz, Tom Berwanger, Emmanuel J. Kokarakis, Tanvir Hassan, Kerstin Schipper, +3 more
0citations -
Plant PhysioSpace: a robust tool to compare stress response across plant species2021 PLANT PHYSIOLOGY article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, David Nevarez, Björn Usadel, Mark‐Christoph Ott, +2 more
7citations -
FAIR GraphRAG: A Retrieval-Augmented Generation Approach for Semantic Data Analysis2025 IEEE International Conference on Knowledge Graph (ICKG) conference-paper Computer Science Research Data Management Practices Open access
Marlena Flüh, Soo-Yon Kim, Carolin Victoria Schneider, Sandra Geisler
1citations -
Plant PhysioSpace: a robust tool to compare stress response across plant species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, Bernhard Schuldt, David Nevarez, Björn Usadel, +3 more
1citations -
Inter-spheroid proximity and matrix remodeling determine cancer associated fibroblast mediated cancer cell invasion2025 Acta Biomaterialia article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Pranav Mehta, Ankur Bordoloi, Cor J. Ravensbergen, M. Kristen David, Wilma E. Mesker, Gerrit‐Jan Liefers, +2 more
1citations -
Live imaging of human airway epithelial repair in precision-cut lung slices after targeted cell damage2026 Biochemistry and Biophysics Reports article Medicine Tissue Engineering and Regenerative Medicine Open access
Lara Gentemann, Fabian Röpken, Philipp Joel Mroch, Nils Noltemeyer, Sören Donath, Anna Seidler, +8 more
0citations -
Precision T cell correction platform for inborn errors of immunity2025 Molecular Therapy article Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Katariina Mamia, Sólrún Kolbeinsdóttir, Kornel Labun, Zhuokun Li, Anna Zofia Komisarczuk, Salla Keskitalo, +23 more
3citations -
Analysis of cancer-associated glycosyltransferases reveals novel targets of non-small cell lung cancer pathogenesis2025 Frontiers in Oncology article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Chang Liu, Thomas van Ee, Jurriaan Janssen, Ernesto Rodríguez, Yongsoo Kim, Teodora Radonic, +4 more
4citations