Cell type matching across species using protein embeddings and transfer learning

Zenodo (CERN European Organization for Nuclear Research)

Abstract

TACTiCS is a method to transfer and align cell types in cross-species data. This repository contains the protein sequences, protein embeddings, count matrices and trained models for human, mouse and marmoset.

Authors 4

1. Kirti Biharie

   Delft University of Technology

   Affiliation as printed

   Delft University of Technology

2. Lieke Michielsen Aachen

   Leiden University Medical Center

   Affiliation as printed

   Leiden University Medical Center

3. Marcel J. T. Reinders

   Delft University of Technology

   Affiliation as printed

   Delft University of Technology

4. Ahmed Essam Mahfouz Aachen

   Leiden University Medical Center

   Affiliation as printed

   Leiden University Medical Center