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OmniPath: integrated knowledgebase for multi-omics analysis2025 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli, +25 more
27citations -
OmniPath: integrated knowledgebase for multi-omics analysis2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli, +25 more
0citations -
Human pluripotent stem cell fate trajectories toward lung and hepatocyte progenitors2023 iScience article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Chaido Ori, Meshal Ansari, Ilias Angelidis, Ruth Olmer, Ulrich Martin, Fabian Joachim Theis, +2 more
4citations -
Interleukin 7 signaling as an indicator of pulmonary vascular disease in preterm infants identified by proteomic screening and MRI analysis2026 Zeitschrift für Geburtshilfe und Neonatologie article Medicine Neonatal Respiratory Health Research
Jennifer M. S. Sucre, Alida S. D. Kindt, F Haefner, A Fomm, Christine von Toerne, Agnese Petrera, +7 more
0citations -
Yeast9: A Consensus Yeast Metabolic Model Enables Quantitative Analysis of Cellular Metabolism By Incorporating Big Data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Chengyu Zhang, Feiran Li, Cheng Wei Quan Eiden, William Taussig Scott, Ulf W. Liebal, Lars M. Blank, +8 more
8citations -
Genomic analysis defines clonal relationships of ductal carcinoma in situ and recurrent invasive breast cancer2022 Nature Genetics article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Esther H. Lips, Tapsi Kumar, Anargyros Megalios, Lindy L. Visser, Michael Sheinman, Angelo Fortunato, +51 more
98citations -
Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity, and scaling2022 iScience article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Barbara Scalvini, Helmut Schießel, Anatoly Golovnev, Alireza Mashaghi
9citations -
Analysis of cancer-associated glycosyltransferases reveals novel targets of non-small cell lung cancer pathogenesis2025 Frontiers in Oncology article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Chang Liu, Thomas van Ee, Jurriaan Janssen, Ernesto Rodríguez, Yongsoo Kim, Teodora Radonic, +4 more
4citations -
Computational Stem Cell Biology: Open Questions and Guiding Principles2021 Cell stem cell article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Patrick Cahan, Davide Cacchiarelli, Sara-Jane Dunn, Martin Hemberg, Susana M. Chuva de Sousa Lopes, Samantha A. Morris, +3 more
36citations -
Cell DiffErential Expression by Pooling (CellDEEP) highlights issues in differential gene expression in scRNA-seq2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia M Hardy, Andrew McCluskey, Thomas D. Otto, +1 more
0citations -
Author response: Vision, challenges and opportunities for a Plant Cell Atlas2021 peer-review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jahed Ahmed, Oluwafemi Alaba, Gazala Ameen, Vaishali Arora, Mario Alberto Arteaga-Vazquez, Alok Arun, +92 more
1citations -
Cell DiffErential Expression by Pooling (CellDEEP) highlights issues in differential gene expression in scRNA-seq2026 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia M Hardy, A. McCluskey, Thomas D. Otto, +1 more
0citations -
Tviblindi algorithm identifies branching developmental trajectories of human B cell development2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Marina Bakardjieva, Jan Stuchlý, Ondřej Pelák, Marjolein W. J. Wentink, Hana Glier, David Novák, +6 more
1citations -
Tviblindi algorithm identifies branching developmental trajectories of human B‐cell development and describes abnormalities in RAG‐1 and WAS patients2024 European Journal of Immunology article Immunology and Microbiology T-cell and B-cell Immunology Open access
Marina Bakardjieva, Ondřej Pelák, Marjolein W. J. Wentink, Hana Glier, David Novák, Jitka Stančíková, +7 more
5citations -
A committed tissue-resident memory T cell precursor within the circulating CD8+ effector T cell pool2020 The Journal of Experimental Medicine article Immunology and Microbiology T-cell and B-cell Immunology Open access cited by 1 patent
Lianne Kok, Feline E. Dijkgraaf, Jos H. M. Urbanus, Kaspar Bresser, David W. Vredevoogd, Rebeca F. Cardoso, +3 more
120citations