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Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysis2024 arXiv (Cornell University) preprint Computer Science Advanced Neural Network Applications Open access
Moein Heidari, Sina Ghorbani Kolahi, Sanaz Karimijafarbigloo, Bobby Azad, Afshin Bozorgpour, Soheila Hatami, +5 more
4citations -
SymSeqBench: a unified framework for the generation and analysis of rule-based symbolic sequences and datasets2025 JuSER (Forschungszentrum Jülich) preprint Computer Science semigroups and automata theory Open access
Barna Zajzon, Younes Bouhadjar, Maxime Fabre, Felix Schmidt, Noah Ostendorf, Emre Neftci, +2 more
0citations -
SymSeqBench: a unified framework for the generation and analysis of rule-based symbolic sequences and datasets2025 arXiv (Cornell University) preprint Computer Science semigroups and automata theory Open access
Barna Zajzon, Younes Bouhadjar, Maxime Fabre, Felix Schmidt, Noah Ostendorf, Emre Neftci, +2 more
0citations -
Systematic Characterization of Lysine Post-translational Modification Sites Using MUscADEL2022 Methods in molecular biology book-chapter Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li, Tatiana T. Marquez‐Lago, André Leier, +4 more
2citations -
Multicenter self-supervised computational pathology identifies prognostic histomorphological phenotypes in colorectal cancer2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Floor Heilijgers, Hortense Le, Nicolas Coudray, Afreen Karimkhan, Derek Chen, Koen C.M.J. Peeters, +3 more
0citations -
Artificial Intelligence Approach for the Discovery of Autoantigen Recognition By B-Cell Lymphomas2023 Blood conference-abstract Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches
David Medina, Julieta Sepúlveda-Yáñez, Diego Álvarez-Saravia, Roberto Uribe-Paredes, Hendrik Veelken, Marcelo A. Navarrete
3citations -
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets2022 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, +7 more
102citations -
mcBERT: Patient-Level Single-cell Transcriptomics Data Representation2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Benedikt von Querfurth, Johannes Lohmöller, Jan Pennekamp, Tore Bleckwehl, Rafael Kramann, Klaus Wehrle, +1 more
3citations -
The Changing Face of Oncology Research, Drug Development, and Clinical Practice: Toward Patient‐Focused Precision Therapeutics2020 Clinical Pharmacology & Therapeutics article Mathematics Statistical Methods in Clinical Trials Open access
Karthik Venkatakrishnan, Piet H. van der Graaf, Sarah A. Holstein
4citations -
Capturing and Characterising Notional Machines2020 ACM Conference on Innovation and Technology in Computer Science Education (ITiCSE) conference-paper Computer Science Teaching and Learning Programming Open access
Sally A. Fincher, Johan T. Jeuring, Craig S. Miller, Peter Donaldson, Benedict du Boulay, Matthias Hauswirth, +6 more
16citations