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Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Antimicrobial Resistance in Staphylococcus Open access
Abraham G Moller, Robert A. Petit, Michelle H. Davis, Timothy D. Read
0citations -
Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation2024 Nature Communications article Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access
Alessia Russo, Mattia Alessandrini, Moaïne El Baidouri, Teresa Rosa Galise, Lara Gaidusch, Hannah F. Oertel, +13 more
24citations -
Genome-wide mapping of therapeutically-relevant SARS-CoV-2 RNA structures2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access cited by 5 patents
Ilaria Manfredonia, Chandran Nithin, Almudena Ponce-Salvatierra, Pritha Ghosh, Tomasz K. Wirecki, Tycho Marinus, +5 more
22citations -
Long-read assembly of the black rhinoceros genome reveals Y-chromosomal sequences2023 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ken Kraaijeveld, Koen Bossers, Nikola Petrusevski, Stef Pieterman, Linda G.R. Bruins-van Sonsbeek, Floyd R. A. Wittink
2citations -
The complete genome sequences of 17 tree species of Fabaceae (Fabales, Magnoliopsida)2026 Biodiversity Genomes article Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access
Elenice Aparecida Fortes, Jacob B. Landis, Stacy Pirro, Vidal de F. Mansano, Hans ter Steege, Chelsea Dvorak Specht
0citations -
Rapid and reliable species-level identification from clinical samples using 16S rRNA gene nanopore sequencing analysis2025 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bacterial Identification and Susceptibility Testing Open access
Marco J. R. Ivens, Sergio Kamminga, Kawtar Benchamach, Chaimae Akile, Els Wessels, Eric C. J. Claas, +1 more
10citations -
Microbial diversity characterization of seawater in a pilot study using Oxford Nanopore Technologies long-read sequencing2021 BMC Research Notes article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Michael K. Liem, Tonny J. G. Regensburg‐Tuïnk, Christiaan V. Henkel, Hans J. Jansen, Herman P. Spaink
10citations -
Nanopore long-read sequencing for the critically ill facilitates ultrarapid diagnostics and urgent clinical decision making2025 European Journal of Human Genetics article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Daphne J. Smits, Federico Ferraro, Mark Drost, Herma C. van der Linde, Bianca M. de Graaf, Yolande van Bever, +37 more
9citations -
Microbial diversity characterization of seawater in a pilot study using Oxford Nanopore Technologies long-read sequencing2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Michael K. Liem, Tonny J. G. Regensburg‐Tuïnk, Christiaan V. Henkel, Hans J. Jansen, Herman P. Spaink
1citations -
Microbial diversity characterization of seawater in a pilot study using Oxford Nanopore Technologies long-read sequencing2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Michael K. Liem, A.J.G. Regensburg-Tuïnk, C.V. Henkel, Herman P. Spaink
1citations -
Phylogeny of waterfowl (Anseriformes) constructed using genome sequences provides insights into topological incongruences2026 Molecular Biology and Evolution article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Gang Wang, Xinye Zhang, Xufang Ren, Anqi Chen, Ning Zhonghua, Marcel van Tuinen, +1 more
0citations -
Metagenome-Assembled Genomes Generated in a Shotgun Sequencing Benchmark Study2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
0citations -
Selector adeno-associated viral vectors facilitate on-target precise genome editing and purge off-target chromosomal insertions2026 Trends in biotechnology review Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research Open access
Zhen Li, Xiaoling Wang, Jin Liu, Josephine M. Janssen, Rob C. Hoeben, Manuel A.F.V. Gonçalves
0citations -
Reference Genomes used in a Shotgun Sequencing Benchmark Study2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
0citations -
Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy2022 Annals of Clinical and Translational Neurology article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Christine C. Bruels, Hannah R. Littel, Audrey L. Daugherty, Seth A. Stafki, Elicia A. Estrella, Emily S. McGaughy, +17 more
42citations -
Genotyping by sequencing for estimating relative abundances of diatom taxa in mock communities2023 BMC Ecology and Evolution article Environmental Science Environmental DNA in Biodiversity Studies Open access
Ozan Çiftçi, Cornelis A. M. Wagemaker, Adrienne Mertens, Peter M. van Bodegom, Walter Pirovano, Barbara Gravendeel
2citations -
Target Capture Sequencing Provides Insights Into Hybridogenetic Water Frogs2026 Ecology and Evolution article Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Lisanne van Veldhuijzen, Maciej Pabijan, Tariq Stark, Richard P.J.H. Struijk, Ben Wielstra, James France
1citations -
Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties2020 Nature Communications article Biochemistry, Genetics and Molecular Biology Genetic Mapping and Diversity in Plants and Animals Open access cited by 1 patent
Weiyi Zhang, Youjun Zhang, Haiji Qiu, Yafei Guo, Haoliang Wan, Federico Scossa, +14 more
220citations -
Genome structures resolve the early diversification of teleost fishes2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Elise Parey, Alexandra Louis, Jérôme Montfort, Olivier Bouchez, Céline Lopez‐Roques, Carole Iampietro, +24 more
5citations