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The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires2021 Nature Machine Intelligence article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Milena Pavlović, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, +36 more
88citations -
A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover2021 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Etienne Boileau, Janine Altmüller, Isabel S. Naarmann‐de Vries, Christoph Dieterich
21citations -
FERMO: a Dashboard for Automated Prioritization of Molecular Features from Mass Spectral Data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Mitja M. Zdouc, Hannah E. Augustijn, Nataliia V. Machushynets, Lina M. Bayona, Sylvia Soldatou, Niek De Jonge, +5 more
17citations -
Grand Challenges for Predictive Modeling in Small Molecule Drug Discovery2026 ChemRxiv preprint Pharmacology, Toxicology and Pharmaceutics Computational Drug Discovery Methods Open access
Connor W. Coley, Marco De Vivo, Willem Jespers, Ashutosh S. Jogalekar, S Roy Kimura, Lucien Koenekoop, +6 more
6citations -
Comprehensive Evaluation of Quality Indicators: Analyzing the Dutch Breast Cancer Audit2025 International Journal of Health Policy and Management article Medicine Healthcare Quality and Management Open access
Elfi M. Verheul, Margrietha van der Linde, Hester Floor Lingsma, Elvira Lise Vos, Sabine Siesling, Linetta B. Koppert
4citations -
Cell-cell Communication Inference from Single-cell RNA-Seq Data: a Comparison of Methods and Resources2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Daniel Dimitrov, Dénes Türei, Charlotte Boys, James Shiniti Nagai, Ricardo Ramirez Flores, Hyojin Kim, +5 more
3citations -
Large Language Models and Evolutionary Computation: A Critical Review of Bidirectional Interaction, Automated Algorithm Design, and Co-Adaptive Systems2025 arXiv (Cornell University) preprint Computer Science Metaheuristic Optimization Algorithms Research Open access
Dikshit Chauhan, Bapi Dutta, Indu Bala, Bas van Stein, Thomas Bäck
0citations -
72278 - Defining excellence: the first core set of quality indicators for Hirschsprung’s disease care2024 British journal of surgery article Medicine Congenital gastrointestinal and neural anomalies Open access
Anna Löf Granström, Nadine Maria Teunissen, Alejandra Vilanova-Sánchez, Cécile Lambe, Francesco Fascetti Leon, Ivo de Blaauw, +11 more
0citations -
Deploying and Optimizing Embodied Simulations of Large-Scale Spiking Neural Networks on HPC Infrastructure2022 Frontiers in Neuroinformatics article Neuroscience Neural dynamics and brain function Open access
Benedikt Feldotto, Jochen Martin Eppler, Cristian Jimenez-Romero, christopher bignamini, Carlos Enrique Gutierrez, Ugo Albanese, +16 more
14citations -
Evaluating the Evaluator: Problems With SemEval-2020 Task 1 for Lexical Semantic Change Detection2026 Journal of Open Humanities Data article Computer Science Natural Language Processing Techniques Open access
Bach Phan Tat, Kevin Heylen, Dirk Geeraerts, Stefano De Pascale, Dirk Speelman
0citations -
Quantifying Individual and Joint Module Impact in Modular Optimization Frameworks2024 IEEE Congress on Evolutionary Computation (CEC) conference-paper Computer Science Metaheuristic Optimization Algorithms Research Open access
Ana Nikolikj, Ana Kostovska, Diederick Vermetten, Carola Doerr, Tome Eftimov
6citations