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Single-cell transcriptomics in bone marrow delineates CD56dimGranzymeK+ subset as intermediate stage in NK cell differentiation2022 Frontiers in Immunology article Immunology and Microbiology Immune Cell Function and Interaction Open access
Janine E. Melsen, Monique M. van Ostaijen-ten Dam, Dorenda J. A. Schoorl, Pieter J. Schol, Daphne A. L. van den Homberg, Arjan C. Lankester, +2 more
17citations -
Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Anoushka Joglekar, Andrey D. Prjibelski, Ahmed Essam Mahfouz, Paul G. Collier, Susan Lin, Anna Katharina Schlusche, +22 more
5citations -
Single cell sequencing reveals fibroblast heterogeneity in healthy and diseased vasculature2021 Atherosclerosis article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases
Kim van Kuijk, Ian R McCracken, Renée J. H. A. Tillie, Ruud Wichers Schreur, Richard S. Taylor, Ross Dobie, +11 more
0citations -
Untangling biological factors influencing trajectory inference from single cell data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mohammed Charrout, Marcel J. T. Reinders, Ahmed Essam Mahfouz
2citations -
High-dimensional single-cell analysis of human natural killer cell heterogeneity2024 Nature Immunology article Immunology and Microbiology Immune Cell Function and Interaction Open access
Lucas Rebuffet, Janine E. Melsen, Bertrand Escalière, Daniela Basurto-Lozada, Avinash Bhandoola, Niklas K. Björkström, +21 more
278citations -
Untangling biological factors influencing trajectory inference from single cell data2020 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mohammed Charrout, Marcel J. T. Reinders, Ahmed Essam Mahfouz
12citations -
SciViewer- An interactive browser for visualizing single cell datasets2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Dhawal S. Jain, Sikander Hayat, Joydeep Charkaborty, Pooja Srinivasa, Michael H. Cho, Edwin K. Silverman, +2 more
1citations -
Single-cell genomics reveals the divergent mitochondrial genomes of Retaria (Foraminifera and Radiolaria)2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protist diversity and phylogeny Open access
Jan‐Niklas Macher, Nicole Coots, Yu-Ping Poh, Elsa B. Girard, Anouk Langerak, Sergio A. Muñoz-Gómez, +7 more
1citations -
Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling2022 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine SARS-CoV-2 and COVID-19 Research Open access
Felix Schreibing, Monica Toft Hannani, Hyojin Kim, James Shiniti Nagai, Fabio Ticconi, Eleanor Fewings, +22 more
0citations -
Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling2022 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine SARS-CoV-2 and COVID-19 Research Open access
Felix Schreibing, Monica Toft Hannani, Hyojin Kim, James Shiniti Nagai, Fabio Ticconi, Eleanor Fewings, +22 more
0citations -
Single-cell characterization of human periodontal ligament (PDL) cells reveals uniformly mesenchymal populations in matched maxilla and mandible pairs from four donors2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Periodontal Regeneration and Treatments Open access
Chloé Radermacher, Robert Dzhanaev, Christian Hasberg, Sabine Neuß-Stein, Andrea Gorgels, Julia Moellmann, +8 more
0citations -
Single-Cell Genomics Reveals the Divergent Mitochondrial Genomes of Retaria (Foraminifera and Radiolaria)2023 mBio article Biochemistry, Genetics and Molecular Biology Protist diversity and phylogeny Open access
Jan‐Niklas Macher, Nicole L. Coots, Yu-Ping Poh, Elsa B. Girard, Anouk Langerak, Sergio A. Muñoz-Gómez, +7 more
12citations -
Identifying commonalities between cell lines and tumors at the single cell level using Sobolev Alignment of deep generative models2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Soufiane M. C. Mourragui, Joseph C. Siefert, Marcel J. T. Reinders, Marco Loog, Lodewyk F.A. Wessels
2citations -
SIngle cell level Genotyping Using scRna Data (SIGURD)2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Graßhoff, Milena Kalmer, Nicolas Chatain, Kim Kricheldorf, Angela Maurer, Ralf Weiskirchen, +2 more
0citations -
SIngle cell level Genotyping Using scRna Data (SIGURD)2024 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Graßhoff, Milena Kalmer, Nicolas Chatain, Kim Kricheldorf, Angela Maurer, Ralf Weiskirchen, +2 more
2citations -
Detection of cell markers from single cell RNA-seq with sc2marker2021 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ronghui Li, Bella Benjamin, Rebekka K. Schneider, Ivan G. Costa
0citations -
Detection of cell markers from single cell RNA-seq with sc2marker2021 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ronghui Li, Bella Benjamin, Rebekka K. Schneider, Ivan G. Costa
0citations