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Single Cell Analysis of Regions of Interest (SCARI) using a Novel Photoswitchable Tag2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Anne M. van der Leun, Mirjam E. Hoekstra, Luuk Reinalda, Colinda L. G. J. Scheele, Mireille Toebes, Michel J. van de Graaff, +10 more
0citations -
scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments0citations
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OP0243 SINGLE-CELL RNA SEQUENCING OF ACPA-ENRICHED B CELLS REVEALED A CD11c+ ATYPICAL B CELL GENE SIGNATURE IN RHEUMATOID ARTHRITIS2025 Annals of the Rheumatic Diseases conference-abstract Medicine Rheumatoid Arthritis Research and Therapies Open access
Yasuo Nagafuchi, Linda M. Slot, Deimantė Šimaitė, Aleida M. Bakker, Erik B. van den Akker, Tom W. J. Huizinga, +3 more
0citations -
Community-driven ELIXIR activities in single-cell omics2022 F1000Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Paulo Czarnewski, Ahmed Essam Mahfouz, Raffaele Calogero, Patricia M. Palagi, Laura Portell-Silva, Asier Gonzalez‐Uriarte, +21 more
11citations -
Peer Review Report For: Community-driven ELIXIR activities in single-cell omics [version 1; peer review: 2 approved with reservations]2023 peer-review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Paulo Czarnewski, Ahmed Essam Mahfouz, Raffaele Calogero, Patricia M. Palagi, Laura Portell-Silva, Asier Gonzalez‐Uriarte, +21 more
0citations -
Visual cohort comparison for spatial single-cell omics-data2020 IEEE Transactions on Visualization and Computer Graphics article Computer Science Data Visualization and Analytics Open access
Antonios Somarakis, Marieke E. Ijsselsteijn, Sietse J. Luk, Boyd Kenkhuis, Noel F.C.C. de Miranda, Boudewijn P. F. Lelieveldt, +1 more
20citations -
Single-cell transcriptomics in bone marrow delineates CD56dimGranzymeK+ subset as intermediate stage in NK cell differentiation2022 Frontiers in Immunology article Immunology and Microbiology Immune Cell Function and Interaction Open access
Janine E. Melsen, Monique M. van Ostaijen-ten Dam, Dorenda J. A. Schoorl, Pieter J. Schol, Daphne A. L. van den Homberg, Arjan C. Lankester, +2 more
17citations -
Single-Cell RNA Sequencing Reveals mRNA Splice Isoform Switching during Kidney Development2020 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Yishay Wineberg, Tali Hana Bar-Lev, Anna Futorian, Nissim Ben-Haim, Leah Armon, Debby Ickowicz, +9 more
24citations -
mcBERT: Patient-Level Single-cell Transcriptomics Data Representation2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Benedikt von Querfurth, Johannes Lohmöller, Jan Pennekamp, Tore Bleckwehl, Rafael Kramann, Klaus Wehrle, +1 more
3citations -
scE(match): Privacy-Preserving Cluster Matching of Single-Cell Data2024 IEEE International Conference on Trust, Security and Privacy in Computing and Communications (TrustCom) conference-paper Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Johannes Lohmöller, Jannis Scheiber, Rafael Kramann, Klaus Wehrle, Sikander Hayat, Jan Pennekamp
2citations -
Comparison of Liquid Chromatography- and Nano-Electrospray Ionization-Mass Spectrometry Approaches for Single-Cell Metabolomics2026 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Abigail Cook, Claire Davison, Jordan Pascoe, Harpreet Atwal, George Mayson, Dany J. V. Beste, +1 more
3citations -
A Single-Cell Level Comparison of Human Inner Ear Organoids and the Human Cochlea and Vestibular Organs2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Hearing, Cochlea, Tinnitus, Genetics Open access
Wouter H. van der Valk, Edward S. A. van Beelen, Matthew R. Steinhart, Carl A. Nist-Lund, John C.M.J. de Groot, Peter Paul G. van Benthem, +2 more
2citations -
Advances in single-cell metabolomics to unravel cellular heterogeneity in plant biology2023 PLANT PHYSIOLOGY article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Kanchana Pandian, Minami Matsui, Thomas Hankemeier, Ahmed Ali, Emiko Okubo-Kurihara
36citations -
Capillary microsampling-based single-cell metabolomics by mass spectrometry and its applications in medicine and drug discovery2022 Cancer Biomarkers article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Yasmine Abouleila, Ahmed Ali, Keiko Masuda, Alireza Mashaghi, Yoshihiro Shimizu
6citations -
Single-cell RNA sequencing of human fetal epicardium reveals novel markers and regulators of EMT2020 European Heart Journal article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
T J Streef, Tessa van Herwaarden, Anke M. Smits, Marie‐José Goumans
0citations