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CosmicNet II: emulating extended cosmologies with efficient and accurate neural networks2022 Journal of Cosmology and Astroparticle Physics article Physics and Astronomy Cosmology and Gravitation Theories Open access
Sven Günther, Julien Lesgourgues, Georgios Samaras, Nils Schöneberg, Florian Stadtmann, Christian Fidler, +1 more
34citations -
A hyperluminous obscured quasar at a redshift of z ≈ 4.32021 Monthly Notices of the Royal Astronomical Society Letters article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Andreas Efstathiou, K. Małek, D. Burgarella, Peter D. Hurley, Seb Oliver, V. Buat, +6 more
19citations -
3D Point Cloud Compression with Recurrent Neural Network and Image Compression Methods2022 IEEE Intelligent Vehicles Symposium conference-paper Computer Science Advanced Data Compression Techniques Open access
Till Beemelmanns, Yuchen Tao, Bastian Lampe, Lennart Reiher, Raphael van Kempen, Timo Woopen, +1 more
11citations -
eCherry: A Modelica Library for Modular Dynamic Modelling of Electrochemical Reactors2025 Electrochemical Science Advances article Computer Science Modeling and Simulation Systems Open access
Jan F. Pyschik, Katharina M. Ebeling, Georgia Ioanna Prokopou, Michael J. Rix, J. Raphael Seidenberg, Matthias Leitl, +2 more
2citations -
Mapping past human land use using archaeological data: A new classification for global land use synthesis and data harmonization2021 PLoS ONE article Earth and Planetary Sciences Archaeology and ancient environmental studies Open access
Kathleen D. Morrison, Emily Louise Hammer, Oliver Boles, Marco Madella, Nicki J. Whitehouse, Marie‐José Gaillard, +57 more
106citations -
A Comprehensive Workflow for Applying Single-Cell Clustering and Pseudotime Analysis to Flow Cytometry Data2020 The Journal of Immunology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Janine E. Melsen, Monique M. van Ostaijen-ten Dam, Arjan C. Lankester, Marco W. Schilham, Erik B. van den Akker
56citations -
scACCorDiON: a clustering approach for explainable patient level cell–cell communication graph analysis2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Tiago Maié, Michael T. Schaub, Ivan G. Costa
3citations -
scAGG: Sample-level embedding and classification of Alzheimer's disease from single-nucleus data2025 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Timo Verlaan, Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
2citations -
MACA: Marker-based automatic cell-type annotation for single cell expression data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Simon J. Baumgart, Christian M. Stegmann, Sikander Hayat
2citations -
SIngle cell level Genotyping Using scRna Data (SIGURD)2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Graßhoff, Milena Kalmer, Nicolas Chatain, Kim Kricheldorf, Angela Maurer, Ralf Weiskirchen, +2 more
0citations -
scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments0citations
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scDecorr: feature decorrelation based representation learning enables self-supervised alignment of multiple single-cell experiments2026 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ritabrata Sanyal, Yang Xu, Hyojin Kim, Rafael Kramann, Sikander Hayat
0citations -
Cytosplore EvoViewer: Visual Analytics of Conserved Evolutionary Patterns in multi-species single-cell sequencing data2025 IEEE Pacific Visualization Conference (PacificVis) conference-paper Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Soumyadeep Basu, Morgan E. Wirthlin, Jeroen Eggermont, Thomas Kroes, Boudewijn P. F. Lelieveldt, Ed S. Lein, +2 more
0citations -
PILOT-GM-VAE: Patient-Level Analysis of single cell Disease Atlas with Optimal Transport of Gaussian Mixture Variational Autoencoders2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, James Shiniti Nagai, Tiago Maié, Christoph Kuppe, Ivan G. Costa
0citations -
scRIPT: a rapid, high-coverage single-cell lineage-tracing method applied to the hematoendothelial differentiation of embryonic stem cells2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Rıdvan Çeti̇n, Eric M. Bindels, Jente van Staalduinen, Lucas Kuijpers, Giulia Picco, Mathijs Arnoud Sanders, +6 more
0citations