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Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data2022 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tommaso Andreani, Linda M. Slot, Samuel Gabillard, Carsten Strübing, Yaligara Veeranagouda, Aleida M. Bakker, +5 more
14citations -
Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tommaso Andreani, Linda M. Slot, Samuel Gabillard, Carsten Struebing, Claus Reimertz, Yaligara Veeranagouda, +6 more
4citations -
SciViewer- An interactive browser for visualizing single cell datasets2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Dhawal S. Jain, Sikander Hayat, Joydeep Charkaborty, Pooja Srinivasa, Michael H. Cho, Edwin K. Silverman, +2 more
1citations -
Batch-effect correction improves downstream imaging mass cytometry data quality and facilitates robust cell type identification in the liver and hepatocellular carcinoma microenvironment2025 Zeitschrift für Gastroenterologie conference-paper Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Henrike Salié, Ana Marta Sequeira, Marieke E. Ijsselsteijn, Felix Röttele, Yuan Suo, Lara Wischer, +4 more
0citations -
scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments0citations
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scDecorr: feature decorrelation based representation learning enables self-supervised alignment of multiple single-cell experiments2026 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ritabrata Sanyal, Yang Xu, Hyojin Kim, Rafael Kramann, Sikander Hayat
0citations -
Identification of Kidney Cell Types in Single-Cell RNA Sequencing and Single-Nucleus RNA Sequencing Data Using Machine-Learning Algorithms2024 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Siddharth Madapoosi, Adam Tisch, Jan Rosa, Sean F. Eddy, Abhijit S. Naik, Christine P. Limonte, +8 more
0citations -
A clusterability measure for single-cell transcriptomics reveals phenotypic subpopulations2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Maria Mircea, Mazène Hochane, Xueying Fan, Susana M. Chuva de Sousa Lopes, Diego Garlaschelli, Stefan Semrau
0citations -
Evaluation of Key Spatiotemporal Learners for Print Track Anomaly Classification Using Melt Pool Image Streams2023 IFAC-PapersOnLine article Engineering Additive Manufacturing Materials and Processes Open access
Lynn Cherif, Mutahar Safdar, Guy Lamouche, Priti Wanjara, Padma Polash Paul, Gentry Wood, +3 more
5citations -
Uncovering flame physics with machine learning: Application to the reaction rate in hydrogen flames2026 Proceedings of the Combustion Institute article Engineering Combustion and flame dynamics Open access
Antonio Attili, Ludovico Nista, Tommaso Baffetti, Geveen Arumapperuma, Sofiane Al Kassar, Lukas Berger, +3 more
0citations -
Drivers of amphibian population dynamics and asynchrony at local and regional scales2020 Journal of Animal Ecology article Environmental Science Amphibian and Reptile Biology Open access
Hugo Cayuela, Richard A. Griffiths, Nurulhuda Zakaria, Jan W. Arntzen, Pauline Priol, Jean‐Paul Léna, +2 more
35citations -
Flexible 3D kirigami probes for in vitro and in vivo neural applications2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroscience and Neural Engineering Open access
Marie Jung, Jamal Abu Shihada, Simon Decke, Lina Koschinski, Peter Severin Graff, Anke Höllig, +4 more
2citations -
Imaging plant responses to water deficit using electrical resistivity tomography2020 Plant and Soil article Earth and Planetary Sciences Geophysical and Geoelectrical Methods Open access
Sathyanarayan Rao, Nolwenn Lesparre, Adrián Flores Orozco, Florian Wagner, Andreas Kemna, Mathieu Javaux
26citations -
Self-supervised Semantic Segmentation: Consistency over Transformation2023 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW) conference-paper Computer Science Medical Image Segmentation Techniques Open access
Sanaz Karimijafarbigloo, Reza Azad, Amirhossein Kazerouni, Yury Velichko, Ulaş Bağcı, Dorit Merhof
6citations