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Multi-omics HeCaToS dataset of repeated dose toxicity for cardiotoxic & hepatotoxic compounds2022 Scientific Data data-paper Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Marcha C. T. Verheijen, Uğis Sarkans, Witold Wolski, Danyel G. J. Jennen, Florian Caiment, Jos C. S. Kleinjans, +49 more
16citations -
Multi-omics subgroups associated with glycaemic deterioration in type 2 diabetes: an IMI-RHAPSODY Study2024 Frontiers in Endocrinology article Medicine Diabetes, Cardiovascular Risks, and Lipoproteins Open access
Shiying Li, Iulian Dragan, Van Du T. Tran, Chun Ho Fung, Michael K. Hansen, Joline W. J. Beulens, +11 more
7citations -
Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models2023 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo‐Orozco, Joachim Johansen, Jakob Nybo Nissen, +94 more
109citations -
Integrative Multi-omics Analysis of Childhood Aggressive Behavior2022 Behavior Genetics article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Fiona A. Hagenbeek, Jenny van Dongen, René Pool, Peter J. Roetman, Amy C. Harms, Jouke‐Jan Hottenga, +9 more
24citations -
Integrative multi-omics analysis of childhood aggressive behavior2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Fiona A. Hagenbeek, Jenny van Dongen, René Pool, Peter J. Roetman, Amy C. Harms, Jouke‐Jan Hottenga, +9 more
3citations -
Multi-omics phenotyping of the gut-liver axis allows health risk predictability from in vivo subchronic toxicity tests of a low-dose pesticide mixture2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Pesticide Exposure and Toxicity Open access
Robin Mesnage, Maxime Teixeira, Daniele Mandrioli, Laura Falcioni, Quinten R. Ducarmon, Romy Daniëlle Zwittink, +7 more
5citations -
Peer Review Report For: Community-driven ELIXIR activities in single-cell omics [version 1; peer review: 2 approved with reservations]2023 peer-review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Paulo Czarnewski, Ahmed Essam Mahfouz, Raffaele Calogero, Patricia M. Palagi, Laura Portell-Silva, Asier Gonzalez‐Uriarte, +21 more
0citations -
#894 Dynamic multi-omics and mechanistic modelling approach provides deeper insight into kidney fibrosis progression2024 Nephrology Dialysis Transplantation article Medicine Chronic Kidney Disease and Diabetes Open access
Nadine Tuechler, Mira Lea Burtscher, Martin Garrido Rodriguez-Cordoba, Muzamil Majid Khan, Dénes Türei, Rafael Kramann, +3 more
0citations -
Network integration and modelling of dynamic drug responses at multi-omics levels2020 Communications Biology article Medicine Chemotherapy-induced cardiotoxicity and mitigation Open access cited by 1 patent
Nathalie Selevsek, Florian Caiment, Ramona Nudischer, Hans Gmuender, Irina V. Agarkova, Francis L. Atkinson, +37 more
51citations -
The Cell Ontology in the age of single-cell omics2026 eScholarship (California Digital Library) article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian D. Aevermann, Alida Avola, +29 more
7citations -
A framework for sharing of clinical and genetic data for precision medicine applications2024 Nature Medicine article Computer Science Blockchain Technology Applications and Security Open access
Ulugbek K. Baymuradov, Ernest Fraenkel, Lyle W. Ostrow, Andrea Malaspina, Pietro Fratta, Jennifer E. Phillips‐Cremins
37citations -
Multimodal Data Integration Advances Longitudinal Prediction of the Naturalistic Course of Depression and Reveals a Multimodal Signature of Disease Chronicity2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Treatment of Major Depression Open access
Philippe C. Habets, Rajat Mani Thomas, Yuri Milaneschi, Rick Jansen, René Pool, Wouter J. Peyrot, +4 more
0citations -
Integration of a multi-omics stem cell differentiation dataset using a dynamical model2023 PLoS Genetics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Patrick R. van den Berg, Noémie M. L. P. Bérenger-Currias, Bogdan Budnik, Nikolai Slavov, Stefan Semrau
15citations -
Multi‐omics profiling of chronic immune‐mediated skin diseases: SKINERGY protocol and strategic evaluation2026 Journal of the European Academy of Dermatology and Venereology article Medicine Dermatology and Skin Diseases Open access
N Koster, Juul M. P. A. van den Reek, E. M. G. J. de Jong, Sylvia van Beugen, Antoinette I. M. van Laarhoven, Inge Marjet Haeck, +38 more
1citations -
Haplomics: A Snakemake pipeline for haplotype-based association analysis in multi-omics studies2025 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Dariush Ghasemi-Semeskandeh, Luisa Foco, Ryosuke Fujii, Johannes Rainer, Mohadeseh Feli, Markus Ralser, +3 more
0citations