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Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling2022 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine SARS-CoV-2 and COVID-19 Research Open access
Felix Schreibing, Monica Toft Hannani, Hyojin Kim, James Shiniti Nagai, Fabio Ticconi, Eleanor Fewings, +22 more
0citations -
Single-cell profiling reveals age-associated immunity in atherosclerosis2023 Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Virginia Smit, Jill de Mol, Frank H. Schaftenaar, Marie A.C. Depuydt, Rimke J. Postel, Diede Smeets, +19 more
70citations -
Single-Cell Resolution of Cellular Damage Illuminates Disease Progression2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tsimafei Padvitski, Paula Unger Avila, He Chen, Fabian Braun, David Unnersjö‐Jess
1citations -
Single-cell RNA sequencing analysis of the human fetal epicardium reveals several new genes involved in regulation of epicardial activation2024 Cardiovascular Research article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
Anke M. Smits, T J Streef, Els Groeneveld, Tessa van Herwaarden, Marie‐José Goumans
0citations -
Cross-species single-cell RNA sequencing reveals divergent phenotypes and activation states of adaptive immunity in human carotid and experimental murine atherosclerosis2024 Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Hauke Horstmann, Nathaly Anto Michel, Sophie Hansen, Alexandra Lindau, Katharina Pfeil, Marbely C. Fernández, +27 more
36citations -
Author response: A physicochemical perspective of aging from single-cell analysis of pH, macromolecular and organellar crowding in yeast2020 peer-review Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Sara N. Mouton, David J. Thaller, Matthew M. Crane, Irina L. Rempel, Owen T Terpstra, Anton Steen, +4 more
2citations -
Exploring cellular changes in ruptured human quadriceps tendons at single-cell resolution2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tendon Structure and Treatment Open access
Jolet Y. Mimpen, Mathew J. Baldwin, Claudia Paul, Lorenzo Ramos‐Mucci, Alina Kurjan, C. Cohen, +9 more
5citations -
Abstract 4141516: Cross-species single-cell RNA sequencing reveals divergent phenotypes and activation states of adaptive immunity in human carotid and experimental murine atherosclerosis2024 Circulation conference-abstract Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases
Hauke Horstmann, Nathaly Anto-Michel, Holger Winkels, Ingo Hilgendorf, Teresa Gerhardt, Alma Zernecke, +5 more
0citations -
Generating Chromosome Geometries at the Single-Cell Level from Cryo-Electron Tomograms2021 Biophysical Journal article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Benjamin R. Gilbert, Zane R. Thornburg, Vinson Lam, Elizabeth Villa, Remus Thei Dame, Zaida Ann Luthey-Schulten
0citations -
SwarmMAP: Swarm Learning for Decentralized Cell Type Annotation in Single Cell Sequencing Data2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Oliver Lester Saldanha, Vivien Goepp, Hyojin Kim, Jie Ping Zhu, Rafael Kramann, Sikander Hayat, +1 more
1citations -
SwarmMAP: swarm learning for decentralized cell type annotation in single cell sequencing data2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Oliver Lester Saldanha, Vivien Goepp, Hyojin Kim, Jie Fu Zhu, Rafael Kramann, Sikander Hayat, +1 more
1citations -
Microfluidic single-cell scale-down bioreactors: A proof-of-concept for the growth of Corynebacterium glutamicum at oscillating pH values2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Engineering Fluid Dynamics and Mixing Open access
Sarah Täuber, Luisa Blöbaum, Valentin Steier, Marco Oldiges, Alexander Grünberger
2citations -
Single-cell RNA sequencing analysis of the human fetal epicardium results in novel epicardial-specific markers and reveals a role for CRIP1 in epicardial EMT2023 European Heart Journal article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
Anke M. Smits, T J Streef, Els Groeneveld, Tessa van Herwaarden, Marie‐José Goumans
0citations -
Identifying commonalities between cell lines and tumors at the single cell level using Sobolev Alignment of deep generative models2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Soufiane M. C. Mourragui, Joseph C. Siefert, Marcel J. T. Reinders, Marco Loog, Lodewyk F.A. Wessels
2citations -
A physicochemical perspective of aging from single-cell analysis of pH, macromolecular and organellar crowding in yeast2020 eLife article Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Sara N. Mouton, David J. Thaller, Matthew M. Crane, Irina L. Rempel, Owen T Terpstra, Anton Steen, +4 more
52citations