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Accurate characterization of CRISPR-Cas9 genome editing outcomes and mosaicism with near-perfect long reads2026 Genome Medicine article Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Ida Höijer, Robin van Schendel, Anastasia Emmanouilidou, Rebecka Östlund, Ignas Bunikis, Marcel Tijsterman, +2 more
0citations -
An educational guide for nanopore sequencing in the classroom2020 PLoS Computational Biology article Biochemistry, Genetics and Molecular Biology Genetics, Bioinformatics, and Biomedical Research Open access
Alex Salazar, Franklin L. Nóbrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C. Haagsma, +6 more
32citations -
Variant Calling in the Dark Genome: Benchmarking SNV Calls in the Flanks of Structural Variants2026 Genomics Proteomics & Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ningxin Dang, Peng Jia, Jiadong Lin, Yongyong Kang, Z K Li, Kai Ye, +1 more
0citations -
Towards complete and error-free genome assemblies of all vertebrate species2021 Nature article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 1 patent
Arang Rhie, Shane McCarthy, Olivier D. Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, +93 more
3,333citations -
The genome of the "Sea Vomit" Didemnum vexillum2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ernesto Parra-Rincón, Cristian A. Velandia-Huerto, Jörg Fallmann, Adriaan Gittenberger, Federico D. Brown, Peter Florian Stadler, +1 more
1citations -
Chromosome-Level Genome Assembly of the Cape Cliff Lizard (Hemicordylus capensis)2023 Genome Biology and Evolution article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Henrique G. Leitão, Genevieve Diedericks, Chris Broeckhoven, Simon Baeckens, Hannes Svardal
7citations -
Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal2022 Virus Evolution article Medicine Mosquito-borne diseases and control Open access cited by 1 patent
Sofia G. Seabra, Pieter Libin, Kristof Theys, Anna Zhukova, Barney I. Potter, Hanna Nebenzahl-Guimaraes, +12 more
16citations -
Next generation sequencing approaches for the detection and characterization of enteroviruses in clinical, public health, and research settings: Expert view of the European non-polio enterovirus network (ENPEN)2026 Journal of Clinical Virology article Medicine Viral Infections and Immunology Research Open access
Kimberley Benschop, Florian Zwagemaker, Lili Li, Cristina Andrés, Andrés Antón, Carla Berengua, +71 more
1citations -
Towards complete and error-free genome assemblies of all vertebrate species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Arang Rhie, Shane McCarthy, Olivier D. Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, +92 more
197citations -
Design and performance of a long-read sequencing panel for pharmacogenomics2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Pharmacogenetics and Drug Metabolism Open access
Maaike van der Lee, Loes Busscher, Roberta Menafra, Qinglian Zhai, Redmar R. van den Berg, Sarah B. Kingan, +6 more
2citations -
Ultraviolet Mutagenesis Coupled with Next-Generation Sequencing as a Method for Functional Interrogation of Powdery Mildew Genomes2020 Molecular Plant-Microbe Interactions article Agricultural and Biological Sciences Powdery Mildew Fungal Diseases Open access
Mirna Barsoum, Stefan Kusch, Lamprinos Frantzeskakis, Ulrich Schaffrath, Ralph Panstruga
31citations -
Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis2026 Nature Microbiology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
19citations -
What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen2020 Genome Biology and Evolution article Agricultural and Biological Sciences Lichen and fungal ecology Open access
Bastian Greshake Tzovaras, Francisca H. I. D. Segers, Anne Bicker, Francesco Dal Grande, Jürgen Otte, Seyed Yahya Anvar, +3 more
60citations -
DNA sequencing of Linnaeus's Ulva compressa , U. intestinalis , and U. linza (Ulvaceae, Chlorophyta) and other Ulva type specimens2026 Journal of Phycology article Earth and Planetary Sciences Marine and coastal plant biology Open access
Jeffery R. Hughey, Christine A. Maggs, Luna M. van der Loos, Stephen A. Harris, Paul W. Gabrielson
8citations