Papers matching “gene co-expression network” 89
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The human hepatocyte TXG-MAPr: WGCNA transcriptomic modules to support mechanism-based risk assessment2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Giulia Callegaro, Steven J. Kunnen, Panuwat Trairatphisan, Solène Grosdidier, Marije Niemeijer, Wouter den Hollander, +9 more
1citations -
WWP2 confers risk to osteoarthritis by affecting cartilage matrix deposition via hypoxia associated genes2022 Osteoarthritis and Cartilage article Medicine Osteoarthritis Treatment and Mechanisms Open access
Margo Tuerlings, George M. C. Janssen, Marcella van Hoolwerff, Alejandro Rodríguez Ruiz, Evelyn Houtman, H. Eka D. Suchiman, +6 more
17citations -
WWP2 osteoarthritis risk allele rs1052429-A confers risk by affecting cartilage matrix deposition via hypoxia associated genes2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Osteoarthritis Treatment and Mechanisms Open access
Margo Tuerlings, George M. C. Janssen, Ilja Boone, Marcella van Hoolwerff, Alejandro Rodríguez Ruiz, Evelyn Houtman, +7 more
1citations -
Global Transcriptome Analysis Reveals Distinct Phases of the Endothelial Response to TNF2023 The Journal of Immunology article Immunology and Microbiology interferon and immune responses Open access
Eike C. Struck, Tatiana Belova, Ping‐Han Hsieh, Jacob Odeberg, Marieke L. Kuijjer, Philip Dusart, +1 more
5citations -
Differential expression of angiogenesis-related genes ‘VEGF’ and ‘angiopoietin-1’ in metastatic and EMAST-positive colorectal cancer patients2024 Scientific Reports article Biochemistry, Genetics and Molecular Biology Angiogenesis and VEGF in Cancer Open access
Amir Torshizi Esfahani, Somayeh Mohammadpour, Pooya Jalali, Alireza Yaghoobi, Raana Karimpour, S Shiri Torkamani, +3 more
15citations -
Genome-Wide Scans and Transcriptomic Analyses Characterize Selective Changes as a Result of Chlorantraniliprole Resistance in Plutella xylostella2022 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Insect Resistance and Genetics Open access
Wenting Dai, Bin Zhu, Marcel van Tuinen, Tao Zhu, Dongliang Shang, Pedro Almeida, +3 more
2citations -
Dissecting the impact of molecular T-cell HLA mismatches in kidney transplant failure: A retrospective cohort study2022 Frontiers in Immunology article Medicine Renal Transplantation Outcomes and Treatments Open access
William Lemieux, Archer Yi Yang, Matthias Niemann, Karim Oualkacha, Constantin Polychronakos, Robert Liwski, +5 more
18citations -
Human atherosclerotic plaque transcriptomics reveals endothelial beta-2 spectrin as a potential regulator a leaky plaque microvasculature phenotype2024 Angiogenesis article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Timo Rademakers, Marco Manca, Han Young Jin, Tanguy Orban, Ljubica Perisic Matic, Hubertus J. M. Frissen, +16 more
11citations -
Edge and modular significance assessment in individual-specific networks2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access cited by 1 patent
Federico Melograna, Zuqi Li, Gianluca Galazzo, Niels van Best, Monique Mommers, John Penders, +2 more
3citations -
Increasing Temperatures Potentiate the Damage of Rare Earth Element Yttrium to the Crop Plant Triticum aestivum L2022 Journal of Agricultural and Food Chemistry article Environmental Science Environmental Toxicology and Ecotoxicology Open access
Hao Qiu, Cornelis A.M. van Gestel, Willie J.G.M. Peijnenburg, Erkai He
9citations -
Additional file 3 of Genome-enabled insights into the biology of thrips as crop pests2020 Figshare dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Dorith Rotenberg, Aaron A. Baumann, Sulley K. Ben-Mahmoud, Olivier Christiaens, Wannes Dermauw, Panagiotis Ioannidis, +51 more
0citations -
Elucidating another level of epigenetic regulation in osteoarthritis by identifying functional cis -acting long non-coding RNAs and their targets in articular cartilage2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Osteoarthritis Treatment and Mechanisms Open access
Marcella van Hoolwerff, Paula I. Metselaar, Margo Tuerlings, H. Eka D. Suchiman, Nico Lakenberg, Y.F. Ramos, +6 more
0citations -
Comprehensive lincRNA Transcriptome in Acute Myeloid Leukemia: Integrating Known and Newly Identified lincRNAs Across Pediatric and Adult Cohorts2026 Non-Coding RNA article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Saioa Arza-Apalategi, Daan Gilissen, Anne van der Grinten, Seline N. van den Oever, Erik B. van den Akker, Marieke Griffioen, +4 more
0citations -
Additional file 3 of Immune-related 3-lncRNA signature with prognostic connotation in a multi-cancer setting2022 Figshare dataset Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Shimaa Sherif, Raghvendra Mall, Hossam Almeer, Adviti Naik, Abdulaziz Al Homaid, Remy Thomas, +9 more
0citations -
Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Powdery Mildew Fungal Diseases Open access
Jiangzhao Qian, Heba M. M. Ibrahim, Myriam Erz, Florian Kümmel, Ralph Panstruga, Stefan Kusch
2citations -
S22-01 Human hiPSC-derived hepatocyte-like cell stress response fluorescent protein reporter imaging platform for chemical screening2025 Toxicology Letters article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Marije Niemeijer, Tamara Y Danilyuk, Tessa M. S. Hagens, Sibel Bahtiri, Lukas S. Wijaya, Sam C. Davidse, +10 more
0citations -
Genome‐wide DNA methylation patterns associated with sleep and mental health in children: a population‐based study2020 Journal of Child Psychology and Psychiatry article Psychology Sleep and related disorders Open access
M. Elisabeth Koopman‐Verhoeff, Rosa H. Mulder, Jared Saletin, Irwin K. M. Reiss, Gijsbertus T. J. van der Horst, Janine F. Felix, +3 more
32citations -
Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation2025 Genome Medicine article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Han Young Jin, Sanne Lidewij Maas, Yuchi Zou, Chang Wei Lu, Baixue Yu, Rosanna Huchzermeier, +12 more
5citations -
Genetic Classification of Acute Myeloid Leukemia By Differential Long Noncoding RNA Expression2024 Blood conference-abstract Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research
Saioa Arza-Apalategi, Daan Gilissen, Anne van der Grinten, Heuts Branco, Erik B. van den Akker, Marieke Griffioen, +3 more
0citations -
LINC00152 Drives a Competing Endogenous RNA Network in Human Hepatocellular Carcinoma2022 Cells article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Rossella Pellegrino, M. Castoldi, Fabio Ticconi, Britta Skawran, Jan Budczies, Fabian Rose, +8 more
10citations -
Prediction of gene cluster function based on transcriptional regulatory networks uncovers a novel locus required for desferrioxamine B biosynthesis2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Hannah E. Augustijn, Zachary L. Reitz, Le Zhang, Jeanine A. Boot, Somayah S. Elsayed, Gregory L. Challis, +2 more
6citations