Papers matching “transcriptomic data analysis” 189
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Functional genomics analysis identifies T and NK cell activation as a driver of epigenetic clock progression2022 Genome biology article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access cited by 1 patent
Thomas H. Jonkman, Koen F. Dekkers, Roderick C. Slieker, Crystal D. Grant, M. Arfan Ikram, Marleen M. J. van Greevenbroek, +5 more
71citations -
snRNA-seq analysis in multinucleated myogenic FSHD cells identifies heterogeneous FSHD transcriptome signatures associated with embryonic-like program activation and oxidative stress-induced apoptosis2023 Human Molecular Genetics article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Dongxu Zheng, Annelot Wondergem, Susan L. Kloet, Iris M. Willemsen, Judit Balog, Stephen J. Tapscott, +3 more
15citations -
Unraveling the spatial landscape of dystrophinopathies: a transcriptomic approach to Becker and Duchenne muscular dystrophies2026 The Journal of Pathology article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
L. Heezen, Stefan Nicolau, Claudio Novella-Rausell, Julia van der Weerd, Jan Kueckelhaus, Jordi Díaz‐Manera, +7 more
3citations -
Discrimination of Steatotic and Non-Steatotic Chemicals Through Transcriptome Analysis in Primary Human Hepatocytes2026 International Journal of Molecular Sciences article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Christina A. Cramer von Clausbruch, Marcha C. T. Verheijen, Giulia Callegaro, Jonathan H. Freedman, Rita Ortega-Vallbona, Martina Palomino‐Schätzlein, +2 more
1citations -
Transcriptomic profiling of Polycystic Kidney Disease identifies paracrine factors in the early cyst microenvironment2023 Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease article Biochemistry, Genetics and Molecular Biology Genetic and Kidney Cyst Diseases Open access
Sevtap A. Yasinoglu, Thomas B. Kuipers, Ernst Suidgeest, Louise van der Weerd, Hailiang Mei, Hans J. Baelde, +1 more
7citations -
Systematic assessment of transcriptomic and phenotypic biological profiling for mechanism-based hazard assessment using target-annotated reference chemicals in renal proximal tubular epithelial cells2026 Archives of Toxicology article Pharmacology, Toxicology and Pharmaceutics Computational Drug Discovery Methods Open access
Hugo W van Kessel, Marlene Wedler, Palle Steen Helmke, Dace Zigure, Stephen Ferguson, Joshua Harrill, +5 more
2citations -
Proteomic, metabolomic, and transcriptomic examination of APOE transgenic mice2020 Alzheimer s & Dementia article Medicine Alzheimer's disease research and treatments Open access
Eric G. Mohler, Janina S. Ried, Lamiaa Bahnassawy, Peter Reinhardt, Marco Rocha Curado, Margot H.M. Bakker, +6 more
1citations -
GWAS and meta-analysis identifies 49 genetic variants underlying critical COVID-192023 Nature article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Erola Pairo‐Castineira, Konrad Rawlik, Andrew D. Bretherick, Ting Qi, Yang Wu, Isar Nassiri, +84 more
226citations -
Transcriptomic Signatures Associated With Regional Cortical Thickness Changes in Parkinson’s Disease2021 Frontiers in Neuroscience article Medicine Parkinson's Disease Mechanisms and Treatments Open access
Arlin Keo, Oleh Dzyubachyk, Jeroen van der Grond, Jacobus Johannes van Hilten, Marcel J. T. Reinders, Ahmed Essam Mahfouz
8citations -
Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. F. Lelieveldt, Brian Long, Tamim Abdelaal, +12 more
20citations -
Integrative multiomics analysis of human atherosclerosis reveals a serum response factor‐driven network associated with intraplaque hemorrhage2021 Clinical and Translational Medicine article Medicine Cerebrovascular and Carotid Artery Diseases Open access
Han Young Jin, Pieter Goossens, Peter J. Juhasz, Wouter J. Eijgelaar, Marco Manca, Joël Karel, +14 more
100citations -
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production2020 iScience article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Snorre Sulheim, Tjaša Kumelj, Dino van Dissel, Ali Salehzadeh‐Yazdi, Chao Du, Kay Nieselt, +3 more
46citations -
Proteomics for Low Cell Numbers: How to Optimize the Sample Preparation Workflow for Mass Spectrometry Analysis2021 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Sara Kassem, Kyra van der Pan, Anniek L. de Jager, Brigitta A. E. Naber, Inge F. de Laat, Alesha Louis, +3 more
37citations -
PathwayFinder enables linked exploration of cell types and gene modules in spatially resolved transcriptomics data2026 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Lisa Koorneef, Thomas Höllt, Louise van der Weerd, +1 more
0citations