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Normal hearing function genetics: have you heard all about it? An integrated approach of genome-wide association studies and transcriptome-wide association studies in three Italian cohorts
Aurora Santin, Giulia Pianigiani, Alessandro Gialluisi, Alessandro Pecori, Beatrice Spedicati, Mariarosaria Persichillo, +13 more
2citations -
Probing the transcriptome response to shivering in skeletal muscle using a multilayered bioinformatics approach2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Adipose Tissue and Metabolism Open access
Rosalie Baak, Guido J. E. J. Hooiveld, Patrick Schrauwen, Joris Hoeks, Reinier Raymakers, Anja van de Stolpe, +2 more
0citations -
GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
0citations -
Peripheral blood transcriptome profiling enables monitoring disease progression in dystrophic mice and patients2021 EMBO Molecular Medicine article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Mirko Signorelli, Mitra Ebrahimpoor, Olga Veth, Kristina Maria Hettne, Nisha E. Verwey, Raquel García‐Rodríguez, +9 more
23citations -
Utility of Extrapolating Human S1500+ Genes to the Whole Transcriptome: Tunicamycin Case Study2020 Bioinformatics and Biology Insights article Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Deepak Mav, Dhiral P. Phadke, Michele R. Balik-Meisner, Bruce Alex Merrick, Scott S. Auerbach, Marije Niemeijer, +7 more
10citations -
Antithrombin, Protein C, and Protein S: Genome and Transcriptome-Wide Association Studies Identify 7 Novel Loci Regulating Plasma Levels2023 Arteriosclerosis Thrombosis and Vascular Biology article Medicine Blood Coagulation and Thrombosis Mechanisms Open access
Yuekai Ji, Gerard Temprano‐Sagrera, Lori A. Holle, Allison Bebo, Jennifer A. Brody, Ngoc‐Quynh Le, +34 more
7citations -
Resolving the immune response across clonal cancer evolution in situ with Atera whole transcriptome profiling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Maarten van der Linde, Chunfang Zhu, Robert B. West, David G.P. van IJzendoorn, Magdalena Matusiak
1citations -
Combi-seq for multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 4 patents
Lukas Mathur, Bence Szalai, N. H. Du, Ramesh Utharala, Martine Ballinger, Jonathan J. M. Landry, +4 more
27citations -
A synthesis and subgroup analysis of the eosinophilic esophagitis tissue transcriptome2023 Journal of Allergy and Clinical Immunology article Medicine Eosinophilic Esophagitis Open access
Justin Jacobse, Rachel E. Brown, Frank L. Revetta, Michael Fredrick Vaezi, Matthew A. Buendia, Christopher S. Williams, +5 more
23citations -
A Combined mRNA- and miRNA-Sequencing Approach Reveals miRNAs as Potential Regulators of the Small Intestinal Transcriptome in Celiac Disease2021 International Journal of Molecular Sciences article Medicine Celiac Disease Research and Management Open access
Ineke L. Tan, Donatella Barisani, Roberto Panceri, Rutger Modderman, Marijn Caroline Visschedijk, Rinse Karel Weersma, +4 more
16citations -
Application of a pharmacological transcriptome filter identifies a shortlist of mouse glucocorticoid receptor target genes associated with memory consolidation
Jacobus C. Buurstede, Eduardo Henrique de Lima Umeoka, Marcia Santos da Silva, Harm J. Krugers, Marian Joëls, Onno Cornelis Meijer
6citations -
Combi-Seq: Multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Lukas Mathur, Bence Szalai, Ramesh Utharala, Martine Ballinger, Jonathan J. M. Landry, Michaël Ryckelynck, +3 more
4citations -
Discrimination of Steatotic and Non-Steatotic Chemicals Through Transcriptome Analysis in Primary Human Hepatocytes2026 International Journal of Molecular Sciences article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Christina A. Cramer von Clausbruch, Marcha C. T. Verheijen, Giulia Callegaro, Jonathan H. Freedman, Rita Ortega-Vallbona, Martina Palomino‐Schätzlein, +2 more
1citations -
ADAR1-dependent editing regulates human β cell transcriptome diversity during inflammation2022 Frontiers in Endocrinology article Biochemistry, Genetics and Molecular Biology RNA regulation and disease Open access
Florian Szymczak, Roni Cohen‐Fultheim, Sofia Thomaidou, Alexandra Coomans de Brachène, Ângela Castela, Máikel L. Colli, +4 more
19citations -
Systematic transcriptome-based comparison of cellular adaptive stress response activation networks in hepatic stem cell-derived progeny and primary human hepatocytes2021 Toxicology in Vitro article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Bas ter Braak, Marije Niemeijer, Ruben Boon, Celine Parmentier, Audrey Baze, Lysiane Richert, +4 more
14citations -
Transcriptome Analysis Reveals Contrasting Plant Responses of Sorghum bicolor upon Colonization by Two Formae Speciales of Sporisorium reilianum2022 International Journal of Molecular Sciences article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Alana Poloni, Ravindra Garde, Lukas Dorian Dittiger, Theresa Heidrich, Frank Drechsler, Yulei Zhao, +2 more
6citations -
Input data of manuscript "CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells"2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Cornelis A.M. van Bergen, Ewa Szczurek
1citations