Papers matching “protein sequence analysis” 361
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Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Julia Gehrmann, Eduardo Gade Gusmao, +4 more
24citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Eduardo Gade Gusmao, Manuel Allhoff, +3 more
2citations -
Modeling Peptide–Protein Interactions by a Logo-Based Method: Application in Peptide–HLA Binding Predictions2024 Molecules article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Irini Atanas Doytchinova, Mariyana Atanasova, Antonio Fernandez, Francisco Javier Moreno, Frits Koning, Ivan Dimitrov
6citations -
Haplomics: A Snakemake pipeline for haplotype-based association analysis in multi-omics studies2025 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Dariush Ghasemi-Semeskandeh, Luisa Foco, Ryosuke Fujii, Johannes Rainer, Mohadeseh Feli, Markus Ralser, +3 more
0citations -
An Analysis of Nucleotide–Amyloid Interactions Reveals Selective Binding to Codon-Sized RNA2023 Journal of the American Chemical Society article Physics and Astronomy Origins and Evolution of Life Open access
Saroj K. Rout, Riccardo Cadalbert, Nina Schröder, Julia Wang, Johannes Zehnder, Olivia Gampp, +8 more
22citations -
Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut2025 Nature Communications article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Matthias A. Schmitz, Nicholas J Dimonaco, Thomas Clavel, Thomas C. A. Hitch
9citations -
Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Matthias A. Schmitz, Nicholas J Dimonaco, Thomas Clavel, Thomas C. A. Hitch
1citations -
Fast analysis of antibody-derived therapeutics by automated multidimensional liquid chromatography – Mass spectrometry2021 Analytica Chimica Acta article Biochemistry, Genetics and Molecular Biology Protein purification and stability Open access
Sanne Pot, Christoph Gstöttner, Katrin Heinrich, Sina Hoelterhoff, Ingrid Grunert, Michael Leiß, +2 more
27citations -
The Association of Biomolecular Resource Facilities Proteome Informatics Research Group Study on Metaproteomics (iPRG-2020)2023 Journal of Biomolecular Techniques JBT article Chemistry Advanced Proteomics Techniques and Applications Open access
Pratik Dilip Jagtap, Michael R. Hoopmann, Benjamin A. Neely, Antony Harvey, Lukas Käll, Yasset Pérez‐Riverol, +4 more
12citations -
Detailed genetic and functional analysis of the hDMDdel52/mdx mouse model2020 PLoS ONE article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access cited by 1 patent
Alper Yavas, Rudie Weij, Maaike van Putten, Eleni Kourkouta, Chantal Beekman, Jukka T. Puoliväli, +8 more
30citations -
Minigene‐based splicing analysis and ACMG / AMP ‐based tentative classification of 56 ATM variants2022 The Journal of Pathology article Biochemistry, Genetics and Molecular Biology BRCA gene mutations in cancer Open access
Elena Bueno Martínez, Lara Sanoguera‐Miralles, Alberto Valenzuela‐Palomo, Ada Esteban‐Sánchez, Víctor Lorca, Inés Llinares‐Burguet, +9 more
23citations -
Should LC-MS/MS Be the Reference Measurement Procedure to Determine Protein Concentrations in Human Samples?2020 Clinical Chemistry article Medicine Clinical Laboratory Practices and Quality Control Open access
Andrew N. Hoofnagle, Christa M. Cobbaert, Vincent Delatour, Neil L. Kelleher, Mark S. Lowenthal, Christopher M. Shuford
27citations -
Comparative analysis of mouse and human preimplantation development following POU5F1 CRISPR/Cas9 targeting reveals interspecies differences2021 Human Reproduction article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Panagiotis Stamatiadis, Annekatrien Boel, Gwenny Cosemans, Mina Popovic, Bieke Bekaert, Ramesh Reddy Guggilla, +8 more
21citations -
Phyletic distribution and diversification of the Phage Shock Protein stress response system in bacteria and archaea2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Philipp F. Popp, Vadim M. Gumerov, Ekaterina P. Andrianova, Lisa Bewersdorf, Thorsten Mascher, Igor B. Zhulin, +1 more
5citations -
Single-cell RNA sequencing analysis of the human fetal epicardium reveals several new genes involved in regulation of epicardial activation2024 Cardiovascular Research article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
Anke M. Smits, T J Streef, Els Groeneveld, Tessa van Herwaarden, Marie‐José Goumans
0citations -
Ten numbers from the Laplace–Beltrami spectrum facilitate training-free classification of protein structures based on surface shape2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Miriam Fernández-Giro Muñoz, Jessica Emonts, Benjamin Berkels, Johannes F. Buyel
0citations -
Extinct species identification from Upper Pleistocene bone fragments not identifiable from their osteomorphological studies by proteomics analysis2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Earth and Planetary Sciences Archaeology and ancient environmental studies Open access
Fabrice Bray, Stéphanie Flament, Grégory Abrams, Dominique Bonjean, Kévin Di Modica, Christian H. Rolando, +2 more
4citations