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Long-term human organotypic brain slice cultures: a detailed protocol to provide a comprehensive framework for single-neuron and neuronal network investigations2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroscience and Neuropharmacology Research Open access
Aniella Bak, Henner Koch, Karen M. J. van Loo, Katharina Schmied, Birgit Gittel, Yvonne G. Weber, +4 more
1citations -
Genome Analyses of A Worldwide Multisource Collection of Klebsiella variicola Reveal Adaptation Relevant for Human Infection2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Antibiotic Resistance in Bacteria Open access
Jiayu Wang, Claudia E. Coipan, Eelco Franz, Ed J Kuiper, Els Wessels, David L. Gally, +7 more
0citations -
A resource for generating and manipulating human microglial states in vitro2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroinflammation and Neurodegeneration Mechanisms Open access
Michael-John Dolan, Martine Therrien, Saša Jereb, Tushar Kamath, Trevor Atkeson, Samuel E. Marsh, +16 more
12citations -
Mapping the blood vasculature in an intact human kidney using hierarchical phase-contrast tomography2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Physics and Astronomy Digital Holography and Microscopy Open access
Shahrokh Rahmani, Daniyal J. Jafree, Peter David Lee, Paul Tafforeau, Joseph Brunet, Sonal Nandanwar, +7 more
7citations -
Differential regulation of lineage commitment in human and mouse primed pluripotent stem cells by NuRD2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Ramy Ragheb, Sarah Gharbi, Julie Cramard, Oluwaseun Ogundele, Susan L. Kloet, Thomas Burgold, +3 more
1citations -
Single cell RNA sequence analysis of human bone marrow samples reveals new targets for isolation of skeletal stem cells using DNA-coated gold nanoparticles2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Mesenchymal stem cell research Open access
Elloise Matthews, Stuart Lanham, Maria Eleni Kyriazi, Konstantina Alexaki, Afaf Helmy El-Sagheer, Tom Brown, +5 more
3citations -
Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Rachel A. Dalley, Sarah Walling-Bell, Jeremy A. Miller, Femke Waleboer, Julian Thijssen, Audrey McCutcheon, +88 more
3citations -
Human pluripotent stem cells-derived inner ear organoids recapitulate otic development in vitro2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Hearing, Cochlea, Tinnitus, Genetics Open access
Daniela Doda, Sara Alonso Jimenez, Hubert Rehrauer, Jose F. Carreño, Victoria Valsamides, Stefano Di Santo, +7 more
1citations -
Scalable proxiloids enable human-relevant assessment of kidney proximal tubule toxicity2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Acute Kidney Injury Research Open access
Sam Biermans, Dara N. van Heugten, M. Cristina Avramut, Roos-Sanne F. Verkerk, Rianne Y. van Nieuwland, Roan H van Scheppingen, +6 more
0citations -
Modulation of Giant Depolarizing Potentials (GDPs) in Human Large Basket Cells by Norepinephrine and Acetylcholine2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neural dynamics and brain function Open access
Danqing Yang, Guanxiao Qi, Jonas Ort, Victoria Sofie Witzig, Aniella Bak, Daniel Delev, +2 more
0citations -
Fast and efficient generation of knock-in human organoids using homology-independent CRISPR/Cas9 precision genome editing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access cited by 15 patents
Benedetta Artegiani, Delilah F. G. Hendriks, Joep Beumer, Rutger N.U. Kok, Xuan Zheng, Indi P. Joore, +4 more
29citations -
Broad diversity of human gut bacteria accessible via a traceable strain deposition system2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Thomas C. A. Hitch, Johannes M. Masson, Charlie Pauvert, Selina Nüchtern, Nicole Simone Treichel, Marko Baloh, +28 more
13citations -
Multi-Scale Spiking Network Model of Human Cerebral Cortex2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neural dynamics and brain function Open access
Jari Pronold, Alexander van Meegen, Hannah Vollenbröker, Renan O. Shimoura, Mario Senden, Claus Christian Hilgetag, +2 more
5citations -
Single cell trajectory analysis of human pluripotent stem cells differentiating towards lung and hepatocyte progenitors2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Chaido Ori, Meshal Ansari, Ilias Angelidis, Fabian Joachim Theis, Herbert B. Schiller, Micha Drukker
2citations -
Mtb specific HLA-E restricted T cells are induced during Mtb infection but not after BCG administration in non-human primates and humans2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberculosis Research and Epidemiology Open access
Linda Voogd, Marjolein van Wolfswinkel, Iman Satti, Andrew White, Karin Dijkman, Anele Gela, +9 more
1citations -
Graph theory for the analysis of micro-electrode array recordings of human brain slices – framework and benchmarking2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Functional Brain Connectivity Studies Open access
Jonas Ort, Victoria Sofie Witzig, Aniella Bak, Jan Heckelmann, Ann-Kathrin Roeb, Hussam Hamou, +5 more
0citations