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Curation and expansion of Human Phenotype Ontology for defined groups of inborn errors of immunity2021 Journal of Allergy and Clinical Immunology article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Matthias Haimel, Júlia Pázmándi, Raúl Jiménez Heredia, Jasmin Dmytrus, Sevgi Köstel Bal, Samaneh Zoghi, +32 more
33citations -
Identification of kidney cell types in scRNA-seq and snRNA-seq data using machine learning algorithms2024 Heliyon article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Adam Tisch, Siddharth Madapoosi, Stephen R. Blough, Jan Rosa, Sean F. Eddy, Laura H. Mariani, +9 more
3citations -
State of the Art Cell Detection in Bone Marrow Whole Slide Images2021 Journal of Pathology Informatics article Computer Science Digital Imaging for Blood Diseases Open access
Philipp Gräbel, Martina Margrit Crysandt, Reinhild Herwartz, Melanie Baumann, Barbara M. Klinkhammer, Peter Boor, +2 more
7citations -
Identification of Kidney Cell Types in Single-Cell RNA Sequencing and Single-Nucleus RNA Sequencing Data Using Machine-Learning Algorithms2024 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Siddharth Madapoosi, Adam Tisch, Jan Rosa, Sean F. Eddy, Abhijit S. Naik, Christine P. Limonte, +8 more
0citations -
OP1 A novel coronary computed tomography angiography deep-learning methodology for coronary atheroma assessment trained using near-infrared spectroscopy-intravascular ultrasound
Anantharaman Ramasamy, Hessam Sokooti, Xiaotong Zhang, Evangelia Tzorovili, Retesh Bajaj, Pieter H. Kitslaar, +12 more
0citations -
Measuring the practice of shared-decision making (OPTION12): An Investigation into Open-sourced Smaller LLMs (OS-sLLMs) for Better Privacy and Sustainability2026 arXiv (Cornell University) preprint Medicine Artificial Intelligence in Healthcare and Education Open access
Tamara Wit, Lifeng Han, Carly S. Heipon, David Lindevelt, Anne Stiggelbout, Suzan Verberne
0citations -
Integrative Learning of Disentangled Representations from Single-Cell RNA-Sequencing Datasets2026 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
1citations -
Semantic Harmonization Workflow of Health Data: Application in the Post-COVID Network Netherlands2026 Studies in health technology and informatics book-chapter Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Hajar Hasannejadasl, Shuxin Zhang, Bianca M. Boxma‐de Klerk, Jos A. Bosch, Ronald Cornet, Sander M. J. van Kuijk
0citations -
Integrative learning of disentangled representations from single-cell RNA-sequencing datasets2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
0citations -
MITE: the Minimum Information about a Tailoring Enzyme database for capturing specialized metabolite biosynthesis2025 Nucleic Acids Research article Medicine Microbial Natural Products and Biosynthesis Open access
Adriano Rutz, Daniel Probst, César Aguilar, Daniel Yuri Akiyama, Fabrizio Alberti, Hannah E. Augustijn, +41 more
12citations -
A Hybrid Intelligence Method for Argument Mining2024 Journal of Artificial Intelligence Research article Computer Science Sentiment Analysis and Opinion Mining Open access
Michiel van der Meer, Enrico Liscio, Catholijn M. Jonker, Aske Plaat, Piek T. J. M. Vossen, Pradeep Kumar Murukannaiah
7citations -
BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Tim Scherr, Karolin Streule, Andreas Bartschat, Moritz Böhland, Johannes Stegmaier, Markus Reischl, +2 more
5citations