Papers matching “single-cell spatial transcriptomics” 391
Not finding it? Sign in to also search OpenAlex live.
-
A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
0citations -
Towards building the human lung perturbation atlas from slice cultures across health and disease2026 conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Lena Cords, Lea Zimmermann, Diana Porras-Gonzalez, Ahmed Agami, Sai Rama Sridatta Prakki, Danny David Jonigk, +12 more
0citations -
Atlas-scale spatially aware clustering with support for 3D and multimodal data using SpatialLeiden2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Niklas Müller‐Bötticher, Alexander Malt, Paul Kießling, Roland Eils, Christoph Kuppe, Naveed Ishaque
0citations -
673 (Re-) Solving the biology of colorectal cancer onset and progression to improve treatment and prevention2021 Regular and Young Investigator Award Abstracts conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jessica P Roelands, Manon van der Ploeg, Hao Dang, Lukas J.A.C. Hawinkels, Hans Morreau, Noel de Miranda
2citations -
Pseudotime dynamics of T cells in pancreatic ductal adenocarcinoma inform distinct functional states within the regulatory and cytotoxic T cells2023 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ashwin Jainarayanan, Nithishwer Mouroug-Anand, Edward H. Arbe-Barnes, Adam J. Bush, Rachael J. M. Bashford-Rogers, Adam Enver Frampton, +5 more
12citations -
Cross-species consensus atlas of the primate basal ganglia2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Nelson Johansen, Yuanyuan Fu, Matthew T. Schmitz, Alma Dubuc, Niklas Kempynck, Morgan E. Wirthlin, +87 more
11citations -
Revealing the spatio-phenotypic patterning of cells in healthy and tumor tissues with mLSR-3D and STAPL-3D2021 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 4 patents
Ravian L. van Ineveld, Michiel Kleinnijenhuis, María Alieva, Sam de Blank, Mario Barrera Román, Esmée J. van Vliet, +9 more
34citations -
Integrating multiplex immunofluorescent and mass spectrometry imaging to map myeloid heterogeneity in its metabolic and cellular context2022 Cell Metabolism article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Pieter Goossens, Chang Wei Lu, Jianhua Cao, Marion J. Gijbels, Joël Karel, Erwin Wijnands, +11 more
56citations -
Semi‐automated background removal limits data loss and normalizes imaging mass cytometry data2021 Cytometry Part A article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent
Marieke E. Ijsselsteijn, Antonios Somarakis, Boudewijn P. F. Lelieveldt, Thomas Höllt, Noel F.C.C. de Miranda
47citations -
Semi-automated background removal limits loss of data and normalises the images for downstream analysis of imaging mass cytometry data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Marieke E. Ijsselsteijn, Antonios Somarakis, Boudewijn P. F. Lelieveldt, Thomas Höllt, Noel F.C.C. de Miranda
2citations -
Author response: A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife peer-review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
0citations -
Abstract 4969: Absolute quantification of immune cells in bulk DNA samples and liquid biopsies using digital PCR2020 Cancer Research conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Rogier J. Nell, Mieke Versluis, Willem H. Zoutman, Pieter A. van der Velden
0citations -
Revisiting colorectal cancer tumorigenesis with spatially-resolved gene expression profiling2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jessica P Roelands, Manon van der Ploeg, Hao Dang, Jurjen J. Boonstra, James C.H. Hardwick, Lukas J.A.C. Hawinkels, +2 more
1citations -
A 34-Marker Panel for Imaging Mass Cytometric Analysis of Human Snap-Frozen Tissue2020 Frontiers in Immunology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Nannan Guo, Vincent van Unen, Marieke E. Ijsselsteijn, Laura F. Ouboter, Andrea E. van der Meulen‐de Jong, Susana M. Chuva de Sousa Lopes, +3 more
45citations -
An imaging mass cytometry immunophenotyping panel for non-human primate tissues2022 Frontiers in Immunology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Paula Niewold, Marieke E. Ijsselsteijn, Frank A. W. Verreck, Tom H. M. Ottenhoff, Simone A. Joosten
7citations -
Mass cytometry data integration methods reveal rural-urban gradient of immune profiles across geography2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Koen A. Stam, Jeremia Jackson Pyuza, Mikhael D. Manurung, Dicky L. Tahapary, Taniawati Supali, Marloes M.A.R. van Dorst, +5 more
1citations -
Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging2023 Nature Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ellen M. Quardokus, Diane C. Saunders, Elizabeth McDonough, John W. Hickey, Christopher Werlein, Christine Surrette, +32 more
47citations -
A collection of datasets from Publication: Organ Mapping Antibody Panels (OMAPs): A community resource for standardized multiplexed tissue imaging2025 The Human BioMolecular Atlas Program (HuBMAP) other Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ellen M. Quardokus, Diane C. Saunders, John W. Hickey, Christine Surrette, Presha Rajbhandari, Anna Martinez Casals, +18 more
0citations