Papers matching “single-cell spatial transcriptomics” 391
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The pleuroparenchymal fibroelastosis atlas reveals aberrant cell states and their zonation as an alternate roadmap to lung fibrosis2026 Science Advances article Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access
Jannik Ruwisch, Aurélie Cazes, Lena Maureen Leiber, Raphaël Borie, Lavinia Neubert, C Leonard, +40 more
5citations -
ovrlpy2026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Sergio Marco Salas, Paul Kießling, Adrien Guillot, Louis Benedikt Kuemmerle, Frank Tacke, Christoph Kuppe, +4 more
0citations -
ERS International Congress, Madrid, 2019: highlights from the Basic and Translational Science Assembly2020 ERJ Open Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Niki D. J. Ubags, Jonathan R. Baker, Agnes Wilhelmina Boots, Rita Costa, Natalia El-Merhie, Aurélie Fabre, +7 more
4citations -
Cell type matching across species using protein embeddings and transfer learning2024 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Cell type matching across species using protein embeddings and transfer learning2023 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Developmental factors drive the compartmentalised and discontinuous maturation of the small intestinal epithelium during the early postnatal period2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Digestive system and related health Open access
Aline Dupont, Stefan Schlößer, Matthias A. Schmitz, Isabel Richter, Narasimha Murthy Keshava Prasad Gubbi, Mingbo Cheng, +9 more
0citations -
Developmental factors drive the compartmentalized and discontinuous maturation of the small intestinal epithelium during the early postnatal period2026 PLoS Biology article Biochemistry, Genetics and Molecular Biology Digestive system and related health Open access
Johannes Schöneich, Aline Dupont, Stefan Schlößer, Mingbo Cheng, Matthias A. Schmitz, Isabel Richter, +13 more
0citations -
Image-guided alignment of consecutive multi-modal tissue slides2026 Cell Reports Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Benedetta Manzato, Claudio Novella-Rausell, Gangqi Wang, Nina Ogrinc, Rosalie G. J. Rietjens, Marleen E Jacobs, +3 more
0citations -
Simulated data for CellDEEP analysis2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia Melek Hardy, Andrew McCluskey, Thomas D. Otto, +1 more
0citations -
Simulated data for CellDEEP analysis2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia Melek Hardy, Andrew R. McCluskey, Thomas D. Otto, +1 more
0citations -
Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering2026 Nature Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jieran Sun, Kirti Biharie, Peiying Cai, Niklas Müller‐Bötticher, Paul Kießling, Meghan A. Turner, +47 more
5citations -
A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
1citations -
A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
1citations -
A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
0citations -
Spatial profiling of the spleen in mouse and human myelofibrosis reveals complement-driven immune-stromal interactions as a therapeutic target2026 Cell stem cell article Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Bérénice Dugué, Pia Wanner, Mayra L. Ruiz Tejada Segura, Mohamed Saad, Lucas Greven, Katrin Götz, +33 more
2citations -
A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
5citations