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Low-input Nucleus Isolation and Multiplexing with Barcoded Antibodies of Mouse Sympathetic Ganglia for Single-nucleus RNA Sequencing2022 Journal of Visualized Experiments article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Yang Ge, Lieke van Roon, H. Sophia Chen, Ruben Methorst, Marco C. DeRuiter, Szymon M. Kiełbasa, +1 more
3citations -
Low-input Nucleus Isolation and Multiplexing with Barcoded Antibodies of Mouse Sympathetic Ganglia for Single-nucleus RNA Sequencing2022 Journal of Visualized Experiments article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Yang Ge, Lieke van Roon, H. Sophia Chen, Ruben Methorst, Marco C. DeRuiter, Szymon M. Kiełbasa, +1 more
2citations -
Explainable multi-view framework for dissecting intercellular signaling from highly multiplexed spatial data2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jovan Tanevski, Attila Gábor, Ricardo Ramirez Flores, Denis Schapiro, Julio Sáez-Rodríguez
10citations -
Mapping the Molecular Atlas of Podocyte Response to Glucocorticoids Using Multi-Omics Analyses2023 Journal of the American Society of Nephrology conference-abstract Medicine Renal Diseases and Glomerulopathies
Martijn van den Broek, Bartholomeus T. van den Berge, Michiel F. Schreuder, Bart Smeets, Jitske Jansen
0citations -
Cell Type–Specific Expression of Long Noncoding RNAs in Human Diabetic Kidneys Identifies TARID as a Key Regulator of Podocyte Function2025 Diabetes article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Juliette A. de Klerk, Roderick C. Slieker, Hao Wu, Yoshiharu Muto, Rudmer J. Postma, Leen M. ‘t Hart, +14 more
0citations -
Cell Type-Specific and Diabetic Kidney Disease-Associated Expression of Long Non-Coding RNAs in Human Kidneys2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research
Juliette A. de Klerk, Roderick C. Slieker, Hao Wu, Yoshiharu Muto, Rudmer J. Postma, Leen M. ‘t Hart, +14 more
0citations -
Integrated intra- and intercellular signaling knowledge for multicellular omics analysis2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio‐Escat, Olga Ivanova, Attila Gábor, +3 more
36citations -
Semi‐automated background removal limits data loss and normalizes imaging mass cytometry data2021 Cytometry Part A article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent
Marieke E. Ijsselsteijn, Antonios Somarakis, Boudewijn P. F. Lelieveldt, Thomas Höllt, Noel F.C.C. de Miranda
47citations -
Semi-automated background removal limits loss of data and normalises the images for downstream analysis of imaging mass cytometry data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Marieke E. Ijsselsteijn, Antonios Somarakis, Boudewijn P. F. Lelieveldt, Thomas Höllt, Noel F.C.C. de Miranda
2citations -
Plant PhysioSpace: a robust tool to compare stress response across plant species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, Bernhard Schuldt, David Nevarez, Björn Usadel, +3 more
1citations -
Plant PhysioSpace: a robust tool to compare stress response across plant species2021 PLANT PHYSIOLOGY article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, David Nevarez, Björn Usadel, Mark‐Christoph Ott, +2 more
7citations -
From mechanism to medicine: The progress and potential of epigenetics in osteoarthritis2025 Osteoarthritis and Cartilage Open review Medicine Osteoarthritis Treatment and Mechanisms Open access
Jack B. Roberts, Jason S. Rockel, Rick Mulders, Terence Dante Capellini, Christopher Thomas Appleton, Douglas H. Phanstiel, +11 more
7citations -
Identifying 3D signal overlaps in spatial transcriptomics data with ovrlpy2026 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Sebastian Tiesmeyer, Niklas Müller‐Bötticher, Alexander Malt, Leyao Ma, Sergio Marco Salas, Paul Kießling, +10 more
17citations -
The pleuroparenchymal fibroelastosis atlas reveals aberrant cell states and their zonation as an alternate roadmap to lung fibrosis2026 Science Advances article Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access
Jannik Ruwisch, Aurélie Cazes, Lena Maureen Leiber, Raphaël Borie, Lavinia Neubert, C Leonard, +40 more
6citations -
Inflammation-driven reprogramming of goblet cells underlies the onset of serrated adenomas in colon cancer2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mathijs P. Verhagen, Emily Middendorp Guerra, Rosalie Joosten, Andrea Sacchetti, Wenjie Sun, Karishma Lila, +9 more
0citations -
Protocol for multispectral imaging on cryosections to map myeloid cell heterogeneity in its spatial context2023 STAR Protocols article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Elias B Wieland, Laura JAP Kempen, Chang Wei Lu, Marjo M. P. C. Donners, Erik A.L. Biessen, Pieter Goossens
2citations