Identifying 3D signal overlaps in spatial transcriptomics data with ovrlpy

Nature Biotechnology

Authors 16

1. Sebastian Tiesmeyer

   Berlin Institute of Health at Charité - Universitätsmedizin Berlin · Freie Universität Berlin

   Affiliation as printed

   Berlin Institute of Health at Charité-Universitätsmedizin Berlin, Center of Digital Health, Berlin, Germany

   Freie Universität Berlin, Department of Mathematics and Computer Science, Berlin, Germany

2. Niklas Müller‐Bötticher

   Berlin Institute of Health at Charité - Universitätsmedizin Berlin · Freie Universität Berlin

   Affiliation as printed

   Berlin Institute of Health at Charité-Universitätsmedizin Berlin, Center of Digital Health, Berlin, Germany

   Freie Universität Berlin, Department of Mathematics and Computer Science, Berlin, Germany

3. Alexander Malt

   Berlin Institute of Health at Charité - Universitätsmedizin Berlin · Freie Universität Berlin

   Affiliation as printed

   Berlin Institute of Health at Charité-Universitätsmedizin Berlin, Center of Digital Health, Berlin, Germany

   Freie Universität Berlin, Department of Mathematics and Computer Science, Berlin, Germany

4. Leyao Ma

   Freie Universität Berlin

   Affiliation as printed

   Freie Universität Berlin, Department of Mathematics and Computer Science, Berlin, Germany

5. Sergio Marco Salas

   Stockholm University · Science for Life Laboratory

   Affiliation as printed

   Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden

6. Paul Kießling Aachen Department of Nephrology, Rheumatology, and Clinical Immunology

   Universitätsklinikum Aachen · RWTH Aachen University

   Affiliation as printed

   Department of Nephrology, Rheumatology, and Clinical Immunology, University Hospital RWTH Aachen, Aachen, Germany

7. Paul Horn

   Berlin Institute of Health at Charité - Universitätsmedizin Berlin · Stiftung Charité · Charité - Universitätsmedizin Berlin

   Affiliation as printed

   Berlin Institute of Health at Charité-Universitätsmedizin Berlin, BIH Biomedical Innovation Academy, BIH Charité Digital Clinician Scientist Program, Berlin, Germany

   Department of Hepatology and Gastroenterology, Charité-Universitätsmedizin Berlin, Campus Virchow-Klinikum and Campus Charité Mitte, Berlin, Germany

8. Adrien Guillot

   Stiftung Charité · Charité - Universitätsmedizin Berlin

   Affiliation as printed

   Department of Hepatology and Gastroenterology, Charité-Universitätsmedizin Berlin, Campus Virchow-Klinikum and Campus Charité Mitte, Berlin, Germany

9. Louis Benedikt Kuemmerle

   Helmholtz Munich · Institute of Computational Biology

   Affiliation as printed

   Institute for Tissue Engineering and Regenerative Medicine (iTERM), Helmholtz Zentrum München, Munich, Germany

   Institute of Computational Biology, Computational Health Center, Helmholtz Munich, Munich, Germany

10. Frank Tacke

    Stiftung Charité · Charité - Universitätsmedizin Berlin

    Affiliation as printed

    Department of Hepatology and Gastroenterology, Charité-Universitätsmedizin Berlin, Campus Virchow-Klinikum and Campus Charité Mitte, Berlin, Germany

11. Fabian Joachim Theis

    Helmholtz Munich · Institute of Computational Biology

    Affiliation as printed

    Institute of Computational Biology, Computational Health Center, Helmholtz Munich, Munich, Germany

12. Christoph Kuppe Aachen Department of Nephrology, Rheumatology, and Clinical Immunology

    Universitätsklinikum Aachen · RWTH Aachen University

    Affiliation as printed

    Department of Nephrology, Rheumatology, and Clinical Immunology, University Hospital RWTH Aachen, Aachen, Germany

13. Mats F. Nilsson

    Stockholm University · Science for Life Laboratory

    Affiliation as printed

    Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden

14. Roland Eils

    Heidelberg University · University Hospital Heidelberg · Berlin Institute of Health at Charité - Universitätsmedizin Berlin · Freie Universität Berlin

    Affiliation as printed

    Berlin Institute of Health at Charité-Universitätsmedizin Berlin, Center of Digital Health, Berlin, Germany

    Freie Universität Berlin, Department of Mathematics and Computer Science, Berlin, Germany

    Health Data Science Unit, Heidelberg University Hospital and BioQuant, University of Heidelberg, Heidelberg, Germany

15. Brian Long

    Allen Institute for Brain Science

    Affiliation as printed

    Allen Institute for Brain Science, Seattle, WA, USA

16. Naveed Ishaque corresponding

    Berlin Institute of Health at Charité - Universitätsmedizin Berlin

    Affiliation as printed

    Berlin Institute of Health at Charité-Universitätsmedizin Berlin, Center of Digital Health, Berlin, Germany. naveed.ishaque@bih-charite.de