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NKG2A is a late immune checkpoint on CD8 T cells and marks repeated stimulation and cell division2021 International Journal of Cancer article Immunology and Microbiology Immune Cell Function and Interaction Open access cited by 2 patents
Linda Borst, Marjolein Sluijter, Gregor Sturm, Pornpimol Charoentong, Saskia J A M Santegoets, Mandy van Gulijk, +8 more
58citations -
Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Integrating cell interaction with transcript factors to obtain a robust gene panel for prognostic prediction and therapies in cholangiocarcinoma2022 Research Square preprint Medicine Cholangiocarcinoma and Gallbladder Cancer Studies Open access
Tingjie Wang, Chuanrui Xu, Dan Xu, Xiaofei Yang, Yaxin Liu, Xiujuan Li, +4 more
0citations -
IntraTalker - Modelling Intracellular Signalling in Cellular Crosstalk2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Vanessa Klöker, James S. Nagai, Z. Feng, Lampros Mavrommatis, Larissa Hermanns, Jacqueline Michelle Jara Moscoso, +3 more
1citations -
Current and Future Challenges in Cytometry: Reports of the CYTO 2025 Conference Workshops2026 Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Paul K. Wallace, Evan R. Jellison, Sherry Thornton, Kathleen Kluepfel, Jessica B. Back, Thomas C. Beadnell, +85 more
0citations -
Oropharyngeal cancer cell evolution in the context of tumor-specific immunity2026 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Cancer Immunotherapy and Biomarkers Open access
Roderick Slieker, Saskia J A M Santegoets, Nynke Damstra, Sanne Boekestijn, Marij J.P. Welters, Sjoerd H. van der Burg
0citations -
Oropharyngeal cancer cell evolution in the context of tumor-specific immunity2026 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Cancer Immunotherapy and Biomarkers Open access
Roderick C. Slieker, Saskia J A M Santegoets, Nynke Damstra, Sanne Boekestijn, Marij J.P. Welters, Sjoerd H. van der Burg
0citations -
Tviblindi algorithm identifies branching developmental trajectories of human B cell development2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Marina Bakardjieva, Jan Stuchlý, Ondřej Pelák, Marjolein W. J. Wentink, Hana Glier, David Novák, +6 more
1citations -
Tviblindi algorithm identifies branching developmental trajectories of human B‐cell development and describes abnormalities in RAG‐1 and WAS patients2024 European Journal of Immunology article Immunology and Microbiology T-cell and B-cell Immunology Open access
Marina Bakardjieva, Ondřej Pelák, Marjolein W. J. Wentink, Hana Glier, David Novák, Jitka Stančíková, +7 more
5citations -
AtlasOT - The Fused Unbalanced Gromov-Wasserstein for Multimodal Integration of Disease Atlases2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kai Peng, Mayra L. Ruiz Tejada Segura, Barthélémy Caron, Christoph Kuppe, James Shiniti Nagai, Ivan G. Costa
0citations -
EAP4EMSIG -- Experiment Automation Pipeline for Event-Driven Microscopy to Smart Microfluidic Single-Cells Analysis2024 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Nils Friederich, Angelo Jovin Yamachui Sitcheu, Annika Nassal, Matthias Pesch, Erenus Yildiz, Maximilian Beichter, +9 more
0citations -
Cyt‐Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2025 Conference Workshops2025 Cytometry Part A article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Paul K. Wallace, Evan R. Jellison, Sherry Thornton, Kathleen Kluepfel, Jessica B. Back, Thomas C. Beadnell, +85 more
1citations -
CaClust: linking genotype to transcriptional heterogeneity of follicular lymphoma using BCR and exomic variants2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kazimierz Oksza-Orzechowski, Edwin Quinten, Shadi Darvish Shafighi, Szymon M. Kiełbasa, Hugo W van Kessel, Ruben A. L. de Groen, +6 more
1citations -
SpaceWalker enables interactive gradient exploration for spatial transcriptomics data2023 Cell Reports Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Mitchell M. de Boer, Tamim Abdelaal, Thomas Höllt, +1 more
4citations -
SpaceWalker: Interactive Gradient Exploration for Spatial Transcriptomics Data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Tamim Abdelaal, Thomas Höllt, Boudewijn P. F. Lelieveldt
2citations -
Minuteman – A versatile cloud computational platform for collaborative research2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Decision Sciences Scientific Computing and Data Management Open access
Xin Kai Li, Joydeep Charkaborty, Hayden Moore, Alexis Laux‐Biehlmann, Sikander Hayat, Dhawal S. Jain
0citations -
Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies2020 Frontiers in Oncology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents
Natasja L. De Vries, Ahmed Essam Mahfouz, Frits Koning, Noel F.C.C. de Miranda
60citations -
Explainable multi-view framework for dissecting intercellular signaling from highly multiplexed spatial data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jovan Tanevski, Ricardo O. Ramirez Flores, Attila Gábor, Denis Schapiro, Julio Sáez-Rodríguez
28citations