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An integrated single‐cell RNA ‐seq atlas of the mouse hypothalamic paraventricular nucleus links transcriptomic and functional types2024 Journal of Neuroendocrinology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jari B. Berkhout, Delaram Poormoghadam, Chun‐Xia Yi, Andries Kalsbeek, Onno Cornelis Meijer, Ahmed Essam Mahfouz
38citations -
A network-based transcriptomic landscape of HepG2 cells uncovering causal gene-cytotoxicity interactions underlying drug-induced liver injury2023 Toxicological Sciences article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Lukas S. Wijaya, Attila Gábor, Iris Pot, Luca van de Have, Julio Sáez-Rodríguez, James L. Stevens, +3 more
13citations -
A blood aging clock defines disease-induced deviation from healthy molecular aging2026 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Haotian Li, Sai Liu, Zheng Zhou, Qiulun Lu, Guangji Wang, Zheying Zhu, +1 more
0citations -
Transcriptomic Insights into Lobular Breast Cancer Biology and Patient Outcomes: Analysis of the MINDACT Clinical Trial2026 Clinical Cancer Research article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Christine Desmedt, Ha-Linh Nguyen, Sabine C. Linn, Otto Metzger, Coralie Poncet, Jelle Wesseling, +13 more
0citations -
Comparative cellular analysis of motor cortex in human, marmoset and mouse2021 Nature article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach, +93 more
882citations -
Microanatomy of the Human Atherosclerotic Plaque by Single-Cell Transcriptomics2020 Circulation Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Marie A.C. Depuydt, Koen H.M. Prange, Lotte Slenders, Tiit Örd, D. Elbersen, Arjan Boltjes, +17 more
619citations -
Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community2024 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access cited by 1 patent
Chengyu Zhang, Benjamín J. Sánchez, Feiran Li, Cheng Wei Quan Eiden, William Taussig Scott, Ulf W. Liebal, +9 more
62citations -
Multiomic profiling of transplant glomerulopathy reveals a novel T-cell dominant subclass2023 Kidney International article Medicine Renal Transplantation Outcomes and Treatments Open access
Iacopo Cristoferi, Hilal Varol, Myrthe van Baardwijk, Layla Rahiem, Karishma A. Lila, Thierry P. P. van den Bosch, +13 more
34citations -
In vitro cross-talk between metastasis-competent circulating tumor cells and platelets in colon cancer: a malicious association during the harsh journey in the blood2023 Frontiers in Cell and Developmental Biology article Medicine Cancer Cells and Metastasis Open access
Zahra Eslami‐S, Luis Enrique Cortés‐Hernández, Ilias Glogovitis, Mafalda Antunes‐Ferreira, Silvia D’Ambrosi, Keerthi Kurma, +6 more
28citations -
Single-cell spatial transcriptomics unravels cell states and ecosystems associated with clinical response to immunotherapy2025 Journal for ImmunoTherapy of Cancer article Medicine Cancer Immunotherapy and Biomarkers Open access
Ziena Abdulrahman, Roderick C. Slieker, Daniel McGuire, Marij J.P. Welters, Mariëtte I.E. van Poelgeest, Sjoerd H. van der Burg
23citations -
Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. F. Lelieveldt, Brian Long, Tamim Abdelaal, +12 more
20citations -
Spatial multi-omics in whole skeletal muscle reveals complex tissue architecture2024 Communications Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Clara Martínez Mir, Paola Pisterzi, Isabel de Poorter, Maria Rilou, Melissa van Kranenburg, Bram Heijs, +3 more
18citations