Papers matching “protein sequence analysis” 247
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PyTEA-O: a Python implementation of Two-Entropies Analysis for protein sequence variation analysis2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Rosan C.M. Kuin, Alexander Thomas Julian, J Chander, S Lee, Gerard J. P. van Westen
2citations -
A thorough analysis of the contribution of experimental, derived and sequence-based predicted protein-protein interactions for functional annotation of proteins2020 PLoS ONE article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham
4citations -
System-Wide Analysis of the GATC-Binding Nucleoid-Associated Protein Gbn and Its Impact on Streptomyces Development2022 mSystems article Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Chao Du, Joost J. Willemse, Amanda M. Erkelens, Víctor J. Carrión, Remus Thei Dame, Gilles P. van Wezel
10citations -
Gene and protein sequence features augment HLA class I ligand predictions2024 Cell Reports article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Kaspar Bresser, Benoît P. Nicolet, Anita Jekő, Wei Wu, Fabricio Loayza‐Puch, Reuven Agami, +3 more
4citations -
Localization and discrimination of GG mismatch in duplex DNA by synthetic ligand-enhanced protein nanopore analysis2024 Nucleic Acids Research article Engineering Nanopore and Nanochannel Transport Studies Open access
Wenping Lyu, Jianji Zhu, Xiaoqin Huang, Mauro Chinappi, Denis Garoli, Cenglin Gui, +1 more
6citations -
Comprehensive analysis of neuronal guidance cue expression regulation during monocyte-to-macrophage differentiation reveals post-transcriptional regulation of semaphorin7A by the RNA-binding protein quaking
Huayu Zhang, Jurriën Prins, Dianne Vreeken, Barend W. Florijn, Ruben G. de Bruin, Oscar R. J. van Hengel, +6 more
6citations -
Transcriptome analysis of conditionally immortalized atrial myocytes: identification of a novel atrium-enriched protein involved in sarcomere assembly and maintenance2021 European Heart Journal article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
Pim R.R. van Gorp, Juan Zhang, J Liu, Roula Tsonaka, Hailiang Mei, S O Dekker, +6 more
0citations -
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets2022 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, +7 more
102citations -
Structural Analysis of a Genetically Encoded FRET Biosensor by SAXS and MD Simulations2021 Sensors article Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Ines Reinartz, Mona Sarter, Julia Otten, Henning Höfig, Martina Pohl, Alexander H. Schug, +2 more
14citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Julia Gehrmann, Eduardo Gade Gusmao, +4 more
24citations -
Modeling Peptide–Protein Interactions by a Logo-Based Method: Application in Peptide–HLA Binding Predictions2024 Molecules article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Irini Atanas Doytchinova, Mariyana Atanasova, Antonio Fernandez, Francisco Javier Moreno, Frits Koning, Ivan Dimitrov
6citations -
An Analysis of Nucleotide–Amyloid Interactions Reveals Selective Binding to Codon-Sized RNA2023 Journal of the American Chemical Society article Physics and Astronomy Origins and Evolution of Life Open access
Saroj K. Rout, Riccardo Cadalbert, Nina Schröder, Julia Wang, Johannes Zehnder, Olivia Gampp, +8 more
22citations -
Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut2025 Nature Communications article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Matthias A. Schmitz, Nicholas J Dimonaco, Thomas Clavel, Thomas C. A. Hitch
9citations -
Fast analysis of antibody-derived therapeutics by automated multidimensional liquid chromatography – Mass spectrometry2021 Analytica Chimica Acta article Biochemistry, Genetics and Molecular Biology Protein purification and stability Open access
Sanne Pot, Christoph Gstöttner, Katrin Heinrich, Sina Hoelterhoff, Ingrid Grunert, Michael Leiß, +2 more
27citations -
The Association of Biomolecular Resource Facilities Proteome Informatics Research Group Study on Metaproteomics (iPRG-2020)2023 Journal of Biomolecular Techniques JBT article Chemistry Advanced Proteomics Techniques and Applications Open access
Pratik Dilip Jagtap, Michael R. Hoopmann, Benjamin A. Neely, Antony Harvey, Lukas Käll, Yasset Pérez‐Riverol, +4 more
12citations -
Detailed genetic and functional analysis of the hDMDdel52/mdx mouse model2020 PLoS ONE article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access cited by 1 patent
Alper Yavas, Rudie Weij, Maaike van Putten, Eleni Kourkouta, Chantal Beekman, Jukka T. Puoliväli, +8 more
30citations