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scAGG: Sample-level embedding and classification of Alzheimer's disease from single-nucleus data2025 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Timo Verlaan, Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
4citations -
Enhancing Implicit Neural Representations with Image Feature Embedding for Unsupervised Cardiac Cine MRI Reconstruction2026 arXiv (Cornell University) preprint Medicine Advanced MRI Techniques and Applications Open access
Donghang Lyu, Marius Staring, Y H Dong, Jochen Keupp, Hildo J. Lamb, Mariya Doneva
0citations -
An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics2023 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Stavros Makrodimitris, Bram Pronk, Tamim Abdelaal, Marcel J. T. Reinders
12citations -
Latent Prediction Needs Alignment: A Controlled Study of Joint-Embedding Predictive Vision–Language Learning2026 International Joint Conference on Natural Language Processing and Conference of the Asia-Pacific Chapter of the Association for Computational Linguistics (IJCNLP-AACL) conference-paper Computer Science Multimodal Machine Learning Applications Open access
Mohammad Kohankhaki, Daniel Kusuma, Shirin Salehi, Carsten Kamp, Sigrid Brell‐Çokcan, Anke Schmeink
0citations -
Stochastic neighbor embedding as a tool for visualizing the encoding capability of magnetic resonance fingerprinting dictionaries2021 Magnetic Resonance Materials in Physics Biology and Medicine article Medicine Advanced MRI Techniques and Applications Open access
Kirsten Koolstra, Peter Börnert, Boudewijn P. F. Lelieveldt, Oleh Dzyubachyk
4citations -
Unsupervised embedding of trajectories captures the latent structure of scientific migration2023 Proceedings of the National Academy of Sciences article Decision Sciences scientometrics and bibliometrics research Open access
Dakota Murray, Jisung Yoon, Sadamori Kojaku, Rodrigo Costas, Woo‐Sung Jung, Staša Milojević, +1 more
26citations -
Exploring Embedding Spaces for more Coherent Topic Modeling in Electronic Health Records2022 Conference proceedings/Conference proceedings - IEEE International Conference on Systems, Man, and Cybernetics conference-paper Computer Science Topic Modeling Open access
Emil Rijcken, Kalliopi Zervanou, Marco René Spruit, Pablo J. Mosteiro, Floortje E. Scheepers, Uzay Kaymak
3citations -
Introducing a microstructure-embedded autoencoder approach for reconstructing high-resolution solution field data from a reduced parametric space2024 Computational Mechanics article Physics and Astronomy Model Reduction and Neural Networks Open access
Rasoul Najafi Koopas, Shahed Rezaei, Natalie Rauter, Richard Ostwald, Rolf Lammering
8citations -
Mid-IR cosmological spectrophotometric surveys from space: Measuring AGN and star formation at the cosmic noon with a SPICA-like mission2021 Publications of the Astronomical Society of Australia article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Laura Bisigello, F. J. Carrera, Asantha Roshan Cooray, Roberto Decarli, E. Hatziminaoglou, Alvaro Labiano, +3 more
7citations