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plantR: An R package and workflow for managing species records from biological collections2021 Methods in Ecology and Evolution article Computer Science Research Data Management Practices Open access
Renato A. Ferreira de Lima, Andrea Sánchez‐Tapia, Sara Ribeiro Mortara, Hans ter Steege, Marinez Ferreira de Siqueira
40citations -
A Comprehensive Workflow for Applying Single-Cell Clustering and Pseudotime Analysis to Flow Cytometry Data2020 The Journal of Immunology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Janine E. Melsen, Monique M. van Ostaijen-ten Dam, Arjan C. Lankester, Marco W. Schilham, Erik B. van den Akker
56citations -
A data reduction workflow for mass spectrometry proteoform testing in the clinical laboratory: from antithrombin peaks to diagnosis2026 Clinical Chemistry and Laboratory Medicine (CCLM) article Chemistry Advanced Proteomics Techniques and Applications Open access
Mirjam Kruijt, María Eugenia de la Morena‐Barrio, Javier Corral, Christa M. Cobbaert, L. Renee Ruhaak
0citations -
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object2022 Research Ideas and Outcomes article Decision Sciences Scientific Computing and Data Management Open access
Anna Niehues, Casper de Visser, Fiona A. Hagenbeek, Naama Karu, Alida S. D. Kindt, Purva Kulkarni, +5 more
1citations -
A Workflow for Missing Values Imputation of Untargeted Metabolomics Data2020 Metabolites article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Tariq O. Faquih, Maarten van Smeden, Jiao Min Luo, Saskia le Cessie, Gabi Kastenmüller, Jan Krumsiek, +6 more
53citations -
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images2024 Computer Methods and Programs in Biomedicine article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till A. Braunschweig, Jianning Li, Jens Kleesiek, +6 more
11citations -
QSP Designer: Quantitative systems pharmacology modeling with modular biological process map notation and multiple language code generation2023 CPT Pharmacometrics & Systems Pharmacology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
David M. Hollinshead, Piet H. van der Graaf, Andrzej M. Kierzek
14citations -
GlycoDash: automated, visually assisted curation of glycoproteomics datasets for large sample numbers2025 Analytical and Bioanalytical Chemistry article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Tamás Pongrácz, Steinar Gijze, Agnes L. Hipgrave Ederveen, Rico J. E. Derks, David Falck
5citations -
Robustifying Experimental Tracer Design for13C-Metabolic Flux Analysis2021 Frontiers in Bioengineering and Biotechnology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Martin Beyß, Victor D. Parra-Peña, Howard Ramírez-Malule, Katharina Nöh
10citations -
Dataset and Scripts for Article: "Leveraging non-traditional vector surveillance data for reliable species distribution modeling: insights from Common house mosquito Culex pipiens in Europe"2026 Zenodo (CERN European Organization for Nuclear Research) article Medicine Mosquito-borne diseases and control Open access
Catuxa Cerecedo-Iglesias, Marta Pardo-Araujo, John R.B. Palmer, Fabrizio Montarsi, Luisa Barzon, Anna Papa, +6 more
0citations -
Dataset and Scripts for Article: "Leveraging non-traditional vector surveillance data for reliable species distribution modeling: insights from Common house mosquito Culex pipiens in Europe"2026 Zenodo (CERN European Organization for Nuclear Research) article Medicine Mosquito-borne diseases and control Open access
Catuxa Cerecedo-Iglesias, Marta Pardo-Araujo, John R.B. Palmer, Fabrizio Montarsi, Luisa Barzon, Anna Papa, +6 more
0citations -
Integrating Pharmacokinetics and Quantitative Systems Pharmacology Approaches in Generative Drug Design2025 Journal of Chemical Information and Modeling article Computer Science Computational Drug Discovery Methods Open access
Helle W. van den Maagdenberg, Jikke de Mol van Otterloo, J. G. Coen van Hasselt, Piet H. van der Graaf, Gerard J. P. van Westen
12citations -
Direct Infusion Acoustic Droplet Ejection Mass Spectrometry: Enabling High-Throughput Shotgun Lipidomics2026 Analytical Chemistry article Chemistry Mass Spectrometry Techniques and Applications Open access
Yu Zhang, Amy C. Harms, Lucas Jurado‐Fasoli, Jonatan R. Ruiz, Nicolas Drouin, Thomas Hankemeier
3citations -
Automated Analysis of Alignment in Long-Leg Radiographs by Using a Fully Automated Support System Based on Artificial Intelligence2020 Radiology Artificial Intelligence article Computer Science Medical Image Segmentation Techniques Open access cited by 1 patent
Justus Schock, Daniel Truhn, Daniel Benjamin Abrar, Dorit Merhof, Stefan Conrad, Manuel Post, +3 more
78citations