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RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Julia Gehrmann, Eduardo Gade Gusmao, +4 more
24citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Eduardo Gade Gusmao, Manuel Allhoff, +3 more
2citations -
Trans -eQTLs reveal the architecture of human gene regulatory networks2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Robert Warmerdam, Harm-Jan Westra, Adriaan van der Graaf, Marc Jan Bonder, Patrick Deelen, Tijs van Lieshout, +93 more
2citations -
Enhancing stability of recombinant CHO cells by CRISPR/Cas9-mediated site-specific integration into regions with distinct histone modifications2022 Frontiers in Bioengineering and Biotechnology article Biochemistry, Genetics and Molecular Biology Viral Infectious Diseases and Gene Expression in Insects Open access cited by 4 patents
Oliver Hertel, Anne Neuß, Tobias Busche, David Brandt, Jörn Kalinowski, Janina Bahnemann, +1 more
20citations -
Additional file 4 of The role of MORC3 in silencing transposable elements in mouse embryonic stem cells2021 Figshare dataset Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Jihed Chouaref, Haoyu Wu, William A. Pastor, Ryan L. Kan, Harald Oey, Zheng Li, +7 more
0citations -
Additional file 5 of The role of MORC3 in silencing transposable elements in mouse embryonic stem cells2021 Figshare dataset Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Jihed Chouaref, Haoyu Wu, William A. Pastor, Ryan L. Kan, Harald Oey, Zheng Li, +7 more
0citations -
Targeting the 3D genome by anthracyclines for chemotherapeutic effects2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Minkang Tan, Yuchen Liu, Andrea A. Perreault, Douglas H. Phanstiel, Liping Dou, Baoxu Pang
2citations -
Targeting the 3D genome by anthracyclines for chemotherapeutic effects2025 Proceedings of the National Academy of Sciences article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Minkang Tan, Yuchen Liu, Andrea A. Perreault, Douglas H. Phanstiel, Liping Dou, Baoxu Pang
2citations -
GRHL2 Regulation of Growth/Motility Balance in Luminal versus Basal Breast Cancer2023 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Zi Wang, Bircan Coban, Chen‐Yi Liao, Qiuyu Liu, Erik H.J. Danen
10citations -
The role of MORC3 in silencing transposable elements in mouse embryonic stem cells2021 Epigenetics & Chromatin article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Jihed Chouaref, Haoyu Wu, William A. Pastor, Ryan L. Kan, Harald Oey, Zheng Li, +7 more
30citations -
GRHL2-controlled gene expression networks in luminal breast cancer2023 Cell Communication and Signaling article Biochemistry, Genetics and Molecular Biology Estrogen and related hormone effects Open access
Zi Wang, Bircan Coban, Haoyu Wu, Jihed Chouaref, Lucia Daxinger, Michelle T. Paulsen, +4 more
32citations -
Functional annotation of the 2q35 breast cancer risk locus implicates a structural variant in influencing activity of a long-range enhancer element2021 The American Journal of Human Genetics article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Joseph S. Baxter, Nichola Johnson, Katarzyna Tomczyk, Andrea Gillespie, Sarah L. Maguire, Rachel Brough, +93 more
9citations -
A global regulatory atlas of Streptomyces reveals conserved and diversified transcriptional networks across actinomycetes2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Hannah E. Augustijn, Hiroshi Otani, Augustin Rigolet, Rachel Stuij, Vina My Pham, Leo A. Baumgart, +9 more
0citations -
Lineage commitment of dermal fibroblast progenitors is controlled by Kdm6b‐mediated chromatin demethylation2023 The EMBO Journal article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Quan M Phan, Lucia Salz, Sam S Kindl, Jayden S Lopez, Sean M. Thompson, Jasson Makkar, +2 more
13citations -
Mining a human transcriptome database for chemical modulators of NRF22020 PLoS ONE article Biochemistry, Genetics and Molecular Biology Genomics, phytochemicals, and oxidative stress Open access
John P. Rooney, Brian N. Chorley, Steven W. Hiemstra, Steven Wink, Xuting Wang, Douglas A. Bell, +2 more
54citations -
Detailed molecular and epigenetic characterization of the pig IPEC-J2 and chicken SL-29 cell lines2023 iScience article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Jani de Vos, Richard P. M. A. Crooijmans, Martijn F. L. Derks, Susan L. Kloet, Bert W. Dibbits, Martien A. M. Groenen, +1 more
16citations -
Near telomere-to-telomere genome assemblies of two Chlorella species unveil the composition and evolution of centromeres in green algae2024 BMC Genomics article Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access
Bo Wang, Yanyan Jia, Ningxin Dang, Jie Yu, Stephen J. Bush, Shenghan Gao, +6 more
10citations -
Systems-wide analysis of the ROK-family regulatory gene rokL6 and its role in the control of glucosamine toxicity in Streptomyces coelicolor0citations