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Gene and protein sequence features augment HLA class I ligand predictions2024 Cell Reports article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Kaspar Bresser, Benoît P. Nicolet, Anita Jekő, Wei Wu, Fabricio Loayza‐Puch, Reuven Agami, +3 more
4citations -
Gene and protein sequence features augment HLA class I ligand predictions2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Kaspar Bresser, Benoît P. Nicolet, Anita Jekő, Wei Wu, Fabricio Loayza‐Puch, Reuven Agami, +3 more
0citations -
Pushing the Limit of Asteroseismic Detection for Cool Dwarfs Using TESS and Deep Learning2026 The Astrophysical Journal article Physics and Astronomy Stellar, planetary, and galactic studies Open access
Waly M Z Karim, Rocio Kiman, Derek L. Buzasi, Cecilia Garraffo, Joshua Wing, Jim Fuller, +3 more
0citations -
COSMOS2020: Manifold learning to estimate physical parameters in large galaxy surveys2022 Astronomy and Astrophysics article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
I. Davidzon, Keerthana Jegatheesan, Olivier Ilbert, S. de la Torre, S. K. Leslie, C. Laigle, +13 more
29citations -
Predicting cell population-specific gene expression from genomic sequence2022 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
CoNeS: Conditional neural fields with shift modulation for multi-sequence MRI translation2024 The Journal of Machine Learning for Biomedical Imaging article Computer Science Generative Adversarial Networks and Image Synthesis Open access
Yunjie Chen, Marius Staring, Olaf M. Neve, Stephan R. Romeijn, Erik Frans Hensen, Berit M. Verbist, +2 more
6citations -
SwarmMAP: swarm learning for decentralized cell type annotation in single cell sequencing data2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Oliver Lester Saldanha, Vivien Goepp, Hyojin Kim, Jie Fu Zhu, Rafael Kramann, Sikander Hayat, +1 more
1citations -
SwarmMAP: Swarm Learning for Decentralized Cell Type Annotation in Single Cell Sequencing Data2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Oliver Lester Saldanha, Vivien Goepp, Hyojin Kim, Jie Ping Zhu, Rafael Kramann, Sikander Hayat, +1 more
1citations