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3D fluorescence microscopy data synthesis for segmentation and benchmarking2021 PLoS ONE article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access cited by 1 patent
Dennis Eschweiler, Malte Rethwisch, Mareike Jarchow, Simon Koppers, Johannes Stegmaier
23citations -
Mapping gene by early life stress interactions on child subcortical brain structures: A genome‐wide prospective study2022 JCPP Advances article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Koen Bolhuis, Rosa H. Mulder, Casper L. de Mol, Serena Defina, Varun Warrier, Tonya J.H. White, +3 more
16citations -
Genome-wide mapping of therapeutically-relevant SARS-CoV-2 RNA structures2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access cited by 5 patents
Ilaria Manfredonia, Chandran Nithin, Almudena Ponce-Salvatierra, Pritha Ghosh, Tomasz K. Wirecki, Tycho Marinus, +5 more
22citations -
Validation of a Text-Mining Tool for Extracting Routine Clinical Care Data in Early-Stage Resectable Non–Small Cell Lung Cancer2026 JCO Clinical Cancer Informatics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies
Hanieh Abedian Kalkhoran, Tobias Martinot, Lydia Henrike Nicole Schonewille, Melek Hüyük, Michiel H.J. Huigen, Henk‐Jan Guchelaar, +3 more
0citations -
scTopoGAN: unsupervised manifold alignment of single-cell data2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Akash Kumar Singh, Kirti Biharie, Marcel J. T. Reinders, Ahmed Essam Mahfouz, Tamim Abdelaal
6citations -
scTopoGAN: unsupervised manifold alignment of single-cell data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Akash Kumar Singh, Marcel J. T. Reinders, Ahmed Essam Mahfouz, Tamim Abdelaal
1citations -
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements2020 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access cited by 4 patents
Ilaria Manfredonia, Chandran Nithin, Almudena Ponce-Salvatierra, Pritha Ghosh, Tomasz K. Wirecki, Tycho Marinus, +5 more
323citations -
Identifying signs and symptoms of AL amyloidosis in electronic health records using natural language processing, diagnosis codes, and manually abstracted registry data2023 American Journal of Hematology article Biochemistry, Genetics and Molecular Biology Amyloidosis: Diagnosis, Treatment, Outcomes Open access
Eli Silvert, Laura Hester, Eshwan Ramudu, Colin Pawlowski, Britte Kranenburg, Francis K. Buadi, +7 more
5citations -
Data for Hackett et al. Investigating Enzyme Function by Geometric Matching of Catalytic Motifs2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Raymund Elwin Hackett, Ioannis G. Riziotis, Martin F. Larralde, António Ribeiro, Georg Zeller, Janet M. Thornton
1citations -
Data for Hackett et al. Investigating Enzyme Function by Geometric Matching of Catalytic Motifs2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Raymund Elwin Hackett, Ioannis G. Riziotis, Martin F. Larralde, António Ribeiro, Georg Zeller, J. Thornton
1citations -
Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification2020 Beilstein Journal of Organic Chemistry article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Steffen Lippold, Arnoud H. de Ru, Jan Nouta, Peter A. van Veelen, Magnus Palmblad, Manfred Wuhrer, +1 more
8citations -
WALDO: community-Wide Annotation of γδ Lymphocytes in single-cell Data, Openly benchmarked2026 Zenodo (CERN European Organization for Nuclear Research) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Farid Keramati, Moosa Rezwani, Likai Tan, David Hamilton, Zheng Song, Tao Yang, +10 more
0citations -
Data and code from: Local adaptation to current but not future climate in seasonally tropical dry forests: Population genomic evidence in a Neotropical legume tree2026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Francisco J. Velásquez-Puentes, Walter Durka, C H Hughes, R. Toby Pennington, Jens J. Ringelberg, Renske E. Onstein, +1 more
0citations -
Data and code from: Local adaptation to current but not future climate in seasonally tropical dry forests: Population genomic evidence in a Neotropical legume tree2026 Socio-Environmental Systems Modeling dataset Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Francisco J. Velásquez-Puentes, Walter Durka, C H Hughes, R. Toby Pennington, Jens J. Ringelberg, Renske E. Onstein, +1 more
0citations -
Data and code from: Local adaptation to current but not future climate in seasonally tropical dry forests: Population genomic evidence in a Neotropical legume tree2026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Francisco J. Velásquez-Puentes, Walter Durka, C H Hughes, R. Toby Pennington, Jens Ringelberg, Renske E. Onstein, +1 more
0citations -
Standardized multidisciplinary care for children and adolescents with differences of sex development: a health intelligence approach2025 The Journal of Sexual Medicine article Biochemistry, Genetics and Molecular Biology Sexual Differentiation and Disorders Open access
Lieve Anne Willemsen, Matthijs Stoter, E. van den Boogaard, Stephanie Both, Luitzen Albert Groen, Baudewijntje P.C. Kreukels, +10 more
3citations -
Investigating Enzyme Function by Geometric Matching of Catalytic Motifs2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Ioannis G. Riziotis, Martin F. Larralde, António J. M. Ribeiro, Georg Zeller, Janet M. Thornton
2citations -
Investigating enzyme function by geometric matching of catalytic motifs2026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Ioannis G. Riziotis, Martin F. Larralde, António J. M. Ribeiro, Georg Zeller, Janet M. Thornton
0citations