Data and code from: Local adaptation to current but not future climate in seasonally tropical dry forests: Population genomic evidence in a Neotropical legume tree
Zenodo (CERN European Organization for Nuclear Research)
Abstract
The resources provided here comprise data sets used in our study "Local adaptation to current but not future climate in seasonally tropical dry forests: population genomic evidence in a Neotropical legume tree" comprising genomic data from double digest restriction-site associated DNA (ddRAD) sequencing (i.e. 29266 SNPs) for 109 individuals of Enterolobium cyclocarpum sampled across 12 sites in Colombia. We also provide climate raster layers for the species in northern South America from global climate models for 4 different climatic variables (i.e., temperature seasonality, precipitation of the driest month, average monthly precipitation during the warmest quarter of the year, and average monthly mean temperature over the driest quarter of the year) using three time periods (2041–2060, 2061–2080, and 2071–2100), two emission scenarios (SSP2-4.5 and SSP5-8.5) and three different global climate models ("EC-Earth3-Veg-LR", "GFDL-CM4", and "MPI-ESM1-2-LR"). The R scripts used to reproduce all figures and analyses presented in the paper, including population structure, detection of candidate SNPs, partial RDA, isolation by distance and environment, and genomic offsets, among others, are provided.
Authors 7
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German Centre for Integrative Biodiversity Research
Affiliation as printed
German Centre for Integrative Biodiversity Research
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Helmholtz Centre for Environmental Research
Affiliation as printed
Helmholtz Centre for Environmental Research
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Affiliation as printed
University of Zurich
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Affiliation as printed
University of Exeter
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Wageningen University & Research
Affiliation as printed
Wageningen University & Research
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Renske E. Onstein Aachen
Affiliation as printed
Leiden University
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Wageningen University & Research
Affiliation as printed
Wageningen University & Research
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