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Incremental Parameter Estimation of Stochastic State-Based Models2021 IEEE World Symposium on Applied Machine Intelligence and Informatics (SAMI) conference-paper Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis cited by 1 patent
Anke Schmeink, Guido Dartmann, Lejla Begic Fazlic, Thomas R. Vollmer, Arne Peine, Lukas Märtin
3citations -
Performance and Robustness of Parameter Estimation from Phylogenetic Trees Using Neural Networks2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Tianjian Qin, Koen J. van Benthem, Luís Valente, Rampal S. Etienne
6citations -
A dual-parameter identification approach for data-based predictive modeling of hybrid gene regulatory network-growth kinetics in Pseudomonas putida mt-22020 Bioprocess and Biosystems Engineering article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis
Argyro Tsipa, Jake Alan Pitt, Julio R. Banga, Athanasios Mantalaris
4citations -
Epigenetic clocks may come out of rhythm—implications for the estimation of chronological age in forensic casework2020 International Journal of Legal Medicine article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Barbara Elisabeth Koop, Alexandra Reckert, Yang Han, Wolfgang Wagner, Stefanie Ritz‐Timme
33citations -
SparseAlign: A Grid-Free Algorithm for Automatic Marker Localization and Deformation Estimation in Cryo-Electron Tomography2022 IEEE Transactions on Computational Imaging article Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Poulami Somanya Ganguly, Felix F. Lucka, Holger Kohr, Erik Franken, Hermen Jan Hupkes, Kees Joost Batenburg
1citations -
SparseAlign: A Super-Resolution Algorithm for Automatic Marker Localization and Deformation Estimation in Cryo-Electron Tomography2022 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Poulami Somanya Ganguly, Felix F. Lucka, Holger Kohr, Erik Franken, Hermen Jan Hupkes, K. Joost Batenburg
0citations -
Experimental kS estimation: A comparison of methods for Corynebacterium glutamicum from lab to microfluidic scale2023 Biotechnology and Bioengineering article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Heiko Steinhoff, Maurice Finger, Michael Osthege, Corinna Golze, Simone Schito, Stephan Noack, +2 more
7citations -
Calibration-free estimation of field-dependent aberrations for single-molecule localization microscopy across large fields of view2025 Optica article Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Isabel Droste, Erik Schuitema, Sajjad A. Khan, Myron N.F. Hensgens, Stijn Heldens, Carlas Smith, +5 more
6citations -
Multi-omic data fusion reveals the in vivo enzyme kinetics of Vibrio natriegens at the genome-scale2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
St. Elmo Wilken, Martin Beyß, Miroslav Kratochvíl, Alexa Grebel, Karen Methling, Anja Stefanski, +7 more
0citations -
PEtab-dev/libpetab-python: libpetab-python v0.9.02026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Daniel Weindl, Yannik Schaelte, Dilan Pathirana, Polina Lakrisenko, Fabian Fröhlich, Simon Merkt, +15 more
0citations -
Data-based stochastic modeling reveals sources of activity bursts in single-cell TGF-β signaling2022 PLoS Computational Biology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Niklas Kolbe, Lorenz Hexemer, Lukas-Malte Bammert, Alexander Loewer, Mária Lukáčová-Medviďová, Stefan Legewie
9citations -
Enzyme kcat predictions and inter-method agreement analysis for the Escherichia coli iML1515 metabolic model2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Saleh Alwer, Hugues Escoffier, Chidi Egwu, Farid Zare, Jack McGoldrick, Ronan M. T. Fleming, +12 more
0citations -
Enzyme kcat predictions and inter-method agreement analysis for the Escherichia coli iML1515 metabolic model2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Saleh Alwer, Hugues Escoffier, Chidi Egwu, Farid Zare, Jack McGoldrick, Ronan M. T. Fleming, +12 more
0citations -
PEtab-dev/libpetab-python: libpetab-python v0.8.12026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Daniel Weindl, Yannik Schaelte, Dilan Pathirana, Polina Lakrisenko, Fabian Fröhlich, Simon Jens Merkt, +14 more
0citations -
PEtab-dev/libpetab-python: libpetab-python v0.8.22026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Daniel Weindl, Yannik Schaelte, Dilan Pathirana, Polina Lakrisenko, Fabian Fröhlich, Simon Jens Merkt, +13 more
0citations -
Estimating the redox state of the plastoquinone pool in algae and cyanobacteria via OJIP fluorescence: perspectives and limitations2026 Photosynthesis Research article Biochemistry, Genetics and Molecular Biology Photosynthetic Processes and Mechanisms Open access
Tomáš Zavřel, Anne-Christin Pohland, Tobias Pfennig, Anna Matuszyńska, Szilvia Zita Tóth, Gábor Bernát, +1 more
2citations -
Estimating the redox state of the plastoquinone pool in algae and cyanobacteria via OJIP fluorescence: perspectives and limitations2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Photosynthetic Processes and Mechanisms Open access
Tomáš Zavřel, Anne-Christin Pohland, Tobias Pfennig, Anna Matuszyńska, Szilvia Zita Tóth, Gábor Bernát, +1 more
0citations -
Global sensitivity study for irreversible electroporation: Towards treatment planning under uncertainty2023 Medical Physics article Biochemistry, Genetics and Molecular Biology Microbial Inactivation Methods Open access
Prashanth Lakshmi Narasimhan, Zoi Tokoutsi, Davide Baroli, Marco Baragona, Karen Veroy, Ralph Maessen, +1 more
8citations -
Kinetic Modeling of a Poly(N-vinylcaprolactam-co-glycidyl methacrylate) Microgel Synthesis: A Hybrid In Silico and Experimental Approach2023 Industrial & Engineering Chemistry Research article Biochemistry, Genetics and Molecular Biology Hydrogels: synthesis, properties, applications
Thomas Nevolianis, Nadja Wolter, Luise F. Kaven, Lukas Krep, Can Huang, Adel Mhamdi, +3 more
13citations -
Deep-learning-based multi-class segmentation for automated, non-invasive routine assessment of human pluripotent stem cell culture status2020 Computers in Biology and Medicine article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access cited by 1 patent
Tobias Piotrowski, Oliver Rippel, Andreas Elanzew, Bastian Nießing, Sebastian Stucken, Sven Jung, +6 more
50citations