Papers matching “implementation framework” 52
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ProteinCT: An implementation of the protein circuit topology framework2022 MethodsX article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Duane Moes, Seyedeh Elnaz Banijamali, Vahid Sheikhhassani, Barbara Scalvini, Jaie C. Woodard, Alireza Mashaghi
7citations -
Ligand Affinities within the Open-Boundary Molecular Mechanics/Coarse-Grained Framework (I): Alchemical Transformations within the Hamiltonian Adaptive Resolution Scheme3citations
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A scalable and equitable framework for target and patient prioritisation in rare disease antisense therapeutics2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Ella F. Whittle, Kylie Montgomery, Carme Camps, Nour M. Elkhateeb, Catherine Ryan, Sara Aguti, +26 more
1citations -
DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy2020 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Ruopeng Xie, Jiahui Li, Jiawei Wang, Wei Dai, André Leier, Tatiana T. Marquez‐Lago, +4 more
90citations -
Access to Genetic Testing in Patients With Suspected Genetic Kidney Disease in Europe2026 Kidney International Reports article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Margriet E. Gosselink, Femke Buining, Jens König, A. Titia Lely, Henk J. Groen, Laura R. Claus, +7 more
0citations -
Standardized multidisciplinary care for children and adolescents with differences of sex development: a health intelligence approach2025 The Journal of Sexual Medicine article Biochemistry, Genetics and Molecular Biology Sexual Differentiation and Disorders Open access
Lieve Anne Willemsen, Matthijs Stoter, E. van den Boogaard, Stephanie Both, Luitzen Albert Groen, Baudewijntje P.C. Kreukels, +10 more
3citations -
Integrative Learning of Disentangled Representations from Single-Cell RNA-Sequencing Datasets2026 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
1citations -
Integrative learning of disentangled representations from single-cell RNA-sequencing datasets2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
0citations -
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data2024 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ping‐Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc, Anthony Mathelier, Rebekka Burkholz, Chien‐Yu Chen, +3 more
0citations -
Trans-dimensional Bayesian model averaging for 13C-metabolic flux analysis: evidence-based flux inference under structural model uncertainty2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Johann F. Jadebeck, Anton Stratmann, Martin Beyß, Katharina Nöh
0citations -
Landscape of cancer genomics and precision oncology in Europe2026 The Lancet Regional Health - Europe article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Gro Live Fagereng, Edvard Abel, Andela Skarpa, Angelo Maria Pezzullo, Anke Katharina Bergmann, Abdelrahman Taha, +77 more
0citations -
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data2022 Journal of Biomedical Semantics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, +13 more
48citations -
Semantic modelling of Common Data Elements for Rare Disease registries, and a prototype workflow for their deployment over registry data2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, +12 more
9citations -
mhn : a Python package for analyzing cancer progression with Mutual Hazard Networks2025 Bioinformatics Advances software-paper Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Stefan Vocht, Y. Linda Hu, Kevin Rupp, Tilo Wettig, Lars Grasedyck, Niko Beerenwinkel, +2 more
3citations -
SPARKI: a tool for the statistical analysis of pathogen identification results2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Jacqueline Marcia Boccacino, Martin Del Castillo Velasco‐Herrera, Mathew A. Beale, Jamie Billington, Ian Vermes, Sofia Obolenski, +8 more
2citations -
Abstract A051: Multi-omic explainable machine learning improves cancer treatment outcome prediction2025 Clinical Cancer Research conference-abstract Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies
Khoa Anh Tran, Venkateswar Addala, Lambros T. Koufariotis, Jia Zhang, Scott Wood, Conrad Leonard, +10 more
2citations -
Hydrogen sulfide as a therapeutic gas: challenges and opportunities in precision medicine2026 Medical Gas Research article Biochemistry, Genetics and Molecular Biology Sulfur Compounds in Biology Open access
Okechukwu Paul-Chima Ugwu, Esther Ugo Alum, Val Hyginus Udoka Eze, Mariam Basajja
0citations -
SPARSE -- Efficient High-Resolution SEM Imaging of Rare Microstructural Features Across Large Areas by Selective Rescanning2026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Tom Reclik, Jan Gerlach, Maximilian A. Wollenweber, Yannis P. Korkolis, Sandra Korte‐Kerzel, U. Kerzel
0citations -
SPARSE -- Efficient High-Resolution SEM Imaging of Rare Microstructural Features Across Large Areas by Selective Rescanning2026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Tom Reclik, Jan Gerlach, Maximilian Aeneas Wollenweber, Yannis P. Korkolis, Sandra Korte‐Kerzel, U. Kerzel
0citations