Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findings
Nature Genetics, vol. 56, pp. 1644–1653
Abstract
Individuals with ultrarare disorders pose a structural challenge for healthcare systems since expert clinical knowledge is required to establish diagnoses. In TRANSLATE NAMSE, a 3-year prospective study, we evaluated a novel diagnostic concept based on multidisciplinary expertise in Germany. Here we present the systematic investigation of the phenotypic and molecular genetic data of 1,577 patients who had undergone exome sequencing and were partially analyzed with next-generation phenotyping approaches. Molecular genetic diagnoses were established in 32% of the patients totaling 370 distinct molecular genetic causes, most with prevalence below 1:50,000. During the diagnostic process, 34 novel and 23 candidate genotype-phenotype associations were identified, mainly in individuals with neurodevelopmental disorders. Sequencing data of the subcohort that consented to computer-assisted analysis of their facial images with GestaltMatcher could be prioritized more efficiently compared with approaches based solely on clinical features and molecular scores. Our study demonstrates the synergy of using next-generation sequencing and phenotyping for diagnosing ultrarare diseases in routine healthcare and discovering novel etiologies by multidisciplinary teams.
Authors 99
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
Berlin Institute of Health at Charité - Universitätsmedizin Berlin · Charité - Universitätsmedizin Berlin
Affiliation as printed
BIH Charité Clinician Scientist Program, Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Affiliation as printed
Institute for Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany
-
TUM Klinikum · Institut für Humangenetik · Technical University of Munich
Affiliation as printed
Institute of Human Genetics, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, München, Germany
-
University of Bonn · University Hospital Bonn · Institut für Medizinische Biometrie, Informatik und Epidemiologie
Affiliation as printed
Institut für Medizinische Biometrie, Informatik und Epidemiologie, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
Institute for Genomic Statistics and Bioinformatics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute for Genomic Statistics and Bioinformatics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute for Genomic Statistics and Bioinformatics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
Affiliation as printed
Institute for Medical Genetics, Stellenbosch University, Cape Town, South Africa
-
Düsseldorf University Hospital
Affiliation as printed
Department of Pediatrics, University Hospital Düsseldorf, Düsseldorf, Germany
-
Berlin Institute of Health at Charité - Universitätsmedizin Berlin · Charité - Universitätsmedizin Berlin
Affiliation as printed
BIH Charité Clinician Scientist Program, Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Berlin Institute of Health at Charité - Universitätsmedizin Berlin · Charité - Universitätsmedizin Berlin
Affiliation as printed
BIH Charité Clinician Scientist Program, Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Berlin Institute of Health at Charité - Universitätsmedizin Berlin · Charité - Universitätsmedizin Berlin
Affiliation as printed
BIH Charité Clinician Scientist Program, Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Universitätsklinikum Aachen · Charité - Universitätsmedizin Berlin · RWTH Aachen University
Affiliation as printed
Institute for Human Genetics and Genomic Medicine, Medical Faculty, Uniklinik RWTH Aachen University, Aachen, Germany
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Berlin Institute of Health at Charité - Universitätsmedizin Berlin
Affiliation as printed
Core Uni Bioinformatics, Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Berlin, Germany
Core Uni Bioinformatics, Berlin Institute of Health at Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Center for Chronically Sick Children, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatric Neurology, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute of Cell and Neurobiology, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatric Neurology, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Department of Pediatrics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Department of Pediatrics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Charité - Universitätsmedizin Berlin
Affiliation as printed
Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Berlin, Germany
Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany
-
Affiliation as printed
Department of Human Genetics, Ruhr University Bochum, Bochum, Germany
-
Affiliation as printed
Department of Pediatrics Bochum and CeSER, Ruhr University Bochum, Bochum, Germany
-
Affiliation as printed
Department of Pediatrics Bochum and CeSER, Ruhr University Bochum, Bochum, Germany
-
Affiliation as printed
Department of Pediatrics Bochum and CeSER, Ruhr University Bochum, Bochum, Germany
-
Affiliation as printed
Department of Pediatrics Bochum and CeSER, Ruhr University Bochum, Bochum, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Center for Rare Diseases, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Center for Rare Diseases, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Department of Neurology, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Center for Rare Diseases, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute for Genomic Statistics and Bioinformatics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Center for Rare Diseases, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Center for Rare Diseases, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Clinic for Internal Medicine III, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Clinic for Internal Medicine III, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Center for Rare Diseases, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Department of Neurology, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Department of Neurology, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Department of Neurology, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Department of Neurology, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Department of Neurology, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Department of Neurology, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Department of Neurology, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute of Human Genetics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Department of Neurology, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute for Genomic Statistics and Bioinformatics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University of Bonn · University Hospital Bonn
Affiliation as printed
Institute for Genomic Statistics and Bioinformatics, University of Bonn, Medical Faculty and University Hospital Bonn, Bonn, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
Department of Pediatrics, University Hospital Carl Gustav Carus, Dresden, Germany
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
Department of Pediatrics, University Hospital Carl Gustav Carus, Dresden, Germany
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
Department of Pediatrics, University Hospital Carl Gustav Carus, Dresden, Germany
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
Department of Pediatrics, University Hospital Carl Gustav Carus, Dresden, Germany
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
Department of Pediatrics, University Hospital Carl Gustav Carus, Dresden, Germany
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
Institute for Clinical Genetics, University Hospital Carl Gustav Carus, Dresden, Germany
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
Institute for Clinical Genetics, University Hospital Carl Gustav Carus, Dresden, Germany
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
Department of Pediatrics, University Hospital Carl Gustav Carus, Dresden, Germany
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
Department of Neurology, University Hospital Carl Gustav Carus, Dresden, Germany
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
University Hospital Carl Gustav Carus
Affiliation as printed
University Center for Rare Diseases, University Hospital Carl Gustav Carus, Dresden, Germany
-
Affiliation as printed
Institute of Human Genetics, University Hospital Essen, Essen, Germany
-
Affiliation as printed
Department of Pediatrics II, University Hospital Essen, Essen, Germany
-
Affiliation as printed
Institute of Human Genetics, University Hospital Essen, Essen, Germany
-
Affiliation as printed
Institute of Human Genetics, University Hospital Essen, Essen, Germany
-
Affiliation as printed
Department of Pediatrics II, University Hospital Essen, Essen, Germany
-
Affiliation as printed
Department of Pediatrics II, University Hospital Essen, Essen, Germany
-
Affiliation as printed
Department of Neurology, University Hospital Halle, Halle, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
Institute of Human Genetics, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
Institute of Human Genetics, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
Institute of Human Genetics, University Hospital Hamburg-Eppendorf, Hamburg, Germany
Martin Zeitz Center for Rare Diseases, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
Institute of Human Genetics, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
Heidelberg University · University Medical Center Hamburg-Eppendorf
Affiliation as printed
Institute of Human Genetics, Heidelberg University, Heidelberg, Germany
Institute of Human Genetics, University Hospital Hamburg-Eppendorf, Hamburg, Germany
Martin Zeitz Center for Rare Diseases, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
I. Department of Medicine, University Hospital Hamburg-Eppendorf, Hamburg, Germany
Martin Zeitz Center for Rare Diseases, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
Martin Zeitz Center for Rare Diseases, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
I. Department of Medicine, University Hospital Hamburg-Eppendorf, Hamburg, Germany
Martin Zeitz Center for Rare Diseases, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
Martin Zeitz Center for Rare Diseases, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
Martin Zeitz Center for Rare Diseases, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
Martin Zeitz Center for Rare Diseases, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
University Medical Center Hamburg-Eppendorf
Affiliation as printed
Department of Pediatrics, University Hospital Hamburg-Eppendorf, Hamburg, Germany
-
Affiliation as printed
Institute of Human Genetics, Heidelberg University, Heidelberg, Germany
-
Affiliation as printed
Institute of Human Genetics, Heidelberg University, Heidelberg, Germany
-
Affiliation as printed
Institute of Human Genetics, Heidelberg University, Heidelberg, Germany
-
Affiliation as printed
Institute of Human Genetics, Heidelberg University, Heidelberg, Germany
Cited by 57 stored of 56
No patents citing this paper on Lens.org (checked 2026-10-06).