A

Complementing model species with model clades

The Plant Cell, vol. 36, pp. 1205–1226

Abstract

Model species continue to underpin groundbreaking plant science research. At the same time, the phylogenetic resolution of the land plant tree of life continues to improve. The intersection of these 2 research paths creates a unique opportunity to further extend the usefulness of model species across larger taxonomic groups. Here we promote the utility of the Arabidopsis thaliana model species, especially the ability to connect its genetic and functional resources, to species across the entire Brassicales order. We focus on the utility of using genomics and phylogenomics to bridge the evolution and diversification of several traits across the Brassicales to the resources in Arabidopsis, thereby extending scope from a model species by establishing a "model clade." These Brassicales-wide traits are discussed in the context of both the model species Arabidopsis and the family Brassicaceae. We promote the utility of such a "model clade" and make suggestions for building global networks to support future studies in the model order Brassicales.

Authors 38

  1. Florida Museum of Natural History · University of Florida

    Affiliation as printed

    Florida Museum of Natural History, University of Florida , Gainesville, FL 32611 , USA

  2. Purdue University West Lafayette · Yale University

    Affiliation as printed

    Department of Biochemistry, Purdue University , West Lafayette, IN 47906 , USA

    Department of Ecology and Evolutionary Biology, Yale University , New Haven, CT 06520 , USA

    Department of Biochemistry, Purdue University, West Lafayette, IN 47907-2063, USA

  3. Missouri Botanical Garden

    Affiliation as printed

    Missouri Botanical Garden , Shaw Boulevard, St. Louis, MO 63110 , USA

    Missouri Botanical Garden, 4344 Shaw Boulevard, St. Louis, Missouri 63110, USA

  4. Royal Botanic Gardens, Kew

    Affiliation as printed

    Royal Botanic Gardens , Kew, Richmond, Surrey TW9 3AE , UK

  5. Ben-Gurion University of the Negev

    Affiliation as printed

    Ben-Gurion University of the Negev, French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research , Midreshet Ben-Gurion, 8499000 , Israel

  6. University of Arizona

    Affiliation as printed

    Department of Ecology and Evolutionary Biology, University of Arizona , Tucson, AZ 85721 , USA

  7. Australian National Botanic Gardens

    Affiliation as printed

    National Herbarium of New South Wales, Australian Botanic Garden , Locked Bag 6002, Mount Annan, NSW 2567 , Australia

    National Herbarium of New South Wales, Australian Botanic Garden, Locked Bag 6002, Mount Annan, New South Wales 2567, Australia

  8. Washington University in St. Louis

    Affiliation as printed

    Department of Psychiatry, Washington University in Saint Louis School of Medicine , St. Louis, MO 63110 , USA

    NeuroGenomics and Informatics Center, Washington University in Saint Louis School of Medicine , St. Louis, MO 63108 , USA

  9. Osnabrück University

    Affiliation as printed

    Department of Biology, Botany, University of Osnabrück , D-49076 Osnabrück , Germany

  10. HudsonAlpha Institute for Biotechnology

    Affiliation as printed

    HudsonAlpha Institute for Biotechnology , Huntsville, AL 35806 , USA

  11. North Carolina State University

    Affiliation as printed

    Department of Biological Sciences, Bioinformatics Research Center, Program in Genetics, North Carolina State University , Raleigh, NC 27695 , USA

  12. The University of Adelaide

    Affiliation as printed

    ACEBB and SGC, School of Biological Sciences, The University of Adelaide , Adelaide, SA 5005 , Australia

  13. Louisiana State University

    Affiliation as printed

    Department of Biological Sciences, Louisiana State University , Baton Rouge, LA 70803 , USA

  14. Michigan State University

    Affiliation as printed

    Department of Horticulture, Michigan State University , East Lansing, MI 48864 , USA

  15. University of Alberta

    Affiliation as printed

    Department of Biological Sciences, University of Alberta , Edmonton, Alberta T6G 2E9 , Canada

  16. Translational Genomics Research Institute

    Affiliation as printed

    Cancer and Cell Biology Division, Translational Genomics Research Institute , Phoenix, AZ 85004 , USA

  17. Naturalis Biodiversity Center · Osnabrück University

    Affiliation as printed

    Department of Biology, Botany, University of Osnabrück , D-49076 Osnabrück , Germany

    Functional Traits, Naturalis Biodiversity Center , PO Box 9517, Leiden 2300 RA , the Netherlands

  18. University of Cambridge

    Affiliation as printed

    Department of Plant Sciences, University of Cambridge , Cambridge, CB2 1TN , UK

  19. University of California, Davis

    Affiliation as printed

    Department of Plant Sciences, UC Davis , Davis, CA 95616 , USA

  20. Heidelberg University

    Affiliation as printed

    Centre for Organismal Studies (COS), Heidelberg University , 69120 Heidelberg , Germany

    Centre for Organismal Studies (COS), Heidelberg University, Im Neuenheimer Feld 345, 69120 Heidelberg, Germany

  21. Royal Botanic Gardens, Kew

    Affiliation as printed

    Royal Botanic Gardens , Kew, Richmond, Surrey TW9 3AE , UK

  22. Leiden University · Naturalis Biodiversity Center

    Affiliation as printed

    Functional Traits, Naturalis Biodiversity Center , PO Box 9517, Leiden 2300 RA , the Netherlands

    Institute of Biology Leiden, Plant Sciences, Leiden University , 2333 BE Leiden , the Netherlands

    Institute of Biology Leiden, Plant Sciences, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands

  23. Central European Institute of Technology · Masaryk University · Central European Institute of Technology – Masaryk University

    Affiliation as printed

    CEITEC, and NCBR, Faculty of Science, Masaryk University , 625 00 Brno , Czech Republic

    CEITEC, and NCBR, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic

  24. New York Botanical Garden

    Affiliation as printed

    Institute of Economic Botany, New York Botanical Garden , The Bronx, NY 10458 , USA

  25. University of Arizona

    Affiliation as printed

    Department of Ecology and Evolutionary Biology, University of Arizona , Tucson, AZ 85721 , USA

  26. Institute of Biosciences and Bioresources · National Research Council

    Affiliation as printed

    National Research Council (CNR), Institute of Biosciences and Bioresource (IBBR) , Palermo 90129 , Italy

    National Research Council (CNR), Institute of Biosciences and Bioresource (IBBR), Corso Calatafimi 414, Palermo 90129, Italy

  27. Miami University

    Affiliation as printed

    Biology Department, Miami University , Oxford, OH 45056 , USA

  28. Osnabrück University

    Affiliation as printed

    Department of Biology, Botany, University of Osnabrück , D-49076 Osnabrück , Germany

  29. Royal Botanic Gardens Victoria

    Affiliation as printed

    Royal Botanic Gardens Victoria , Melbourne, VIC 3004 , Australia

  30. Indiana University Bloomington · Indiana University

    Affiliation as printed

    Department of Biology, Indiana University , Bloomington, IN 47405 , USA

  31. University of Missouri

    Affiliation as printed

    Division of Plant Sciences, University of Missouri , Columbia, MO 65211 , USA

  32. Washington State University

    Affiliation as printed

    School of Biological Sciences, Washington State University , Pullman, WA 99164-4236 , USA

  33. Wageningen University & Research

    Affiliation as printed

    Biosystematics Group, Wageningen University , 6708 PB Wageningen , the Netherlands

    Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands

  34. University of Missouri

    Affiliation as printed

    Bioinformatics and Analytics Core, University of Missouri , Columbia, MO 65211 , USA

    Division of Biological Sciences, University of Missouri , Columbia, MO 65211 , USA

  35. Agricultural Research Service · United States Department of Agriculture · Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center

    Affiliation as printed

    Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture , Hilo, HI 96720 , USA

  36. HudsonAlpha Institute for Biotechnology

    Affiliation as printed

    HudsonAlpha Institute for Biotechnology , Huntsville, AL 35806 , USA

  37. Colorado State University

    Affiliation as printed

    Department of Soil and Crop Sciences, Colorado State University , Fort Collins, CO 80523-1170 , USA

  38. HudsonAlpha Institute for Biotechnology

    Affiliation as printed

    HudsonAlpha Institute for Biotechnology , Huntsville, AL 35806 , USA

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References 267