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Protein without farms: What comparative genomics reveals about “Power-to-Food” microbes2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
KARAN KUMAR, Juha‐Pekka Pitkänen, Lars M. Blank, Tobias B. Alter
0citations -
Draft Genome Sequence of Lipopeptide-Producing Strain Pseudomonas fluorescens DSM 11579 and Comparative Genomics with Pseudomonas sp. Strain SH-C52, a Closely Related Lipopeptide-Producing Strain2020 Microbiology Resource Announcements article Medicine Microbial Natural Products and Biosynthesis Open access
Norbert Kirchner, Carolina Cano‐Prieto, Menno van der Voort, Jos M. Raaijmakers, Harald Gross
8citations -
Beyond rational—biosensor-guided isolation of 100 independently evolved bacterial strain variants and comparative analysis of their genomes2023 BMC Biology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Philipp T. Baumann, Michael Dal Molin, Hannah Aring, Karin Krumbach, Moritz‐Fabian Müller, Bas Vroling, +3 more
7citations -
Phylogeny and classification of Odonata using targeted genomics2021 Molecular Phylogenetics and Evolution article Agricultural and Biological Sciences Invertebrate Taxonomy and Ecology Open access
Seth Bybee, Vincent J. Kalkman, Paul B. Frandsen, Jesse W. Breinholt, Anton Suvorov, Klaas‐Douwe B. Dijkstra, +7 more
105citations -
Genomic insights into Clostridia for bioenergy production: A comparative pangenome analysis of Clostridium acetobutylicum and Clostridium pasteurianum2025 Zenodo (CERN European Organization for Nuclear Research) article Environmental Science Microbial Fuel Cells and Bioremediation Open access
KARAN KUMAR, Sayyedamirmasoud Kazemi Avanji, Moholkar, PhD, CEng, FIChemE, FRSC, MAIChE (Sr), Vijayanand, Tobias B. Alter, Lars M. Blank
0citations -
Genomic insights into Clostridia for bioenergy production: A comparative pangenome analysis of Clostridium acetobutylicum and Clostridium pasteurianum2025 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
KARAN KUMAR, Sayyedamirmasoud Kazemi Avanji, Moholkar, PhD, CEng, FIChemE, FRSC, MAIChE (Sr), Vijayanand, Tobias B. Alter, Lars M. Blank
0citations -
Single-cell genomics reveals the divergent mitochondrial genomes of Retaria (Foraminifera and Radiolaria)2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protist diversity and phylogeny Open access
Jan‐Niklas Macher, Nicole Coots, Yu-Ping Poh, Elsa B. Girard, Anouk Langerak, Sergio A. Muñoz-Gómez, +7 more
1citations -
Population Genomics of a Cosmopolitan Weed Provides Insights Into Its Local Adaptation and Recent Demographic History2026 Molecular Ecology article Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Marília Souza Lucas, Christoph Rosche, Isabell Hensen, Stefan G. Michalski, Dávid U. Nagy, Diana Gamba, +84 more
2citations -
Single-Cell Genomics Reveals the Divergent Mitochondrial Genomes of Retaria (Foraminifera and Radiolaria)2023 mBio article Biochemistry, Genetics and Molecular Biology Protist diversity and phylogeny Open access
Jan‐Niklas Macher, Nicole L. Coots, Yu-Ping Poh, Elsa B. Girard, Anouk Langerak, Sergio A. Muñoz-Gómez, +7 more
12citations -
TbasCO: Trait-based Comparative ’Omics Identifies Ecosystem-Level and Niche- Differentiating Adaptations of an Engineered Microbiome2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Elizabeth McDaniel, Joris J.M. van Steenbrugge, Daniel R. Noguera, Katherine D. McMahon, Jos M. Raaijmakers, Marnix H. Medema, +1 more
1citations -
TbasCO: trait-based comparative ‘omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome2022 ISME Communications article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Elizabeth McDaniel, Joris J.M. van Steenbrugge, Daniel R. Noguera, Katherine D. McMahon, Jos M. Raaijmakers, Marnix H. Medema, +1 more
9citations -
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)2023 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, Roman David Bülow, Christoph Kuppe, David Laurin Hölscher, Mingbo Cheng, +10 more
36citations -
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, Roman David Bülow, Christoph Kuppe, David Laurin Hölscher, Mingbo Cheng, +9 more
8citations -
Comparative analysis of mouse and human preimplantation development following POU5F1 CRISPR/Cas9 targeting reveals interspecies differences2021 Human Reproduction article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Panagiotis Stamatiadis, Annekatrien Boel, Gwenny Cosemans, Mina Popovic, Bieke Bekaert, Ramesh Reddy Guggilla, +8 more
21citations -
Integrating genomics and habitat surveys to uncover population structure and regeneration challenges in Adansonia suarezensis (Malvaceae)2025 Annals of Botany article Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Onja Hariveloniaina Morilline Razanamaro, Richard Dominique Randriatsitohaina, Lalaina Fenosoa Ramiliarisona, Rindra Harilanto Nantenaina, Nasandratra Nancia Raoelinjanakolona, Tojonirina Randriarimalala, +12 more
2citations -
Patients with Rare Cancers in the Drug Rediscovery Protocol (DRUP) Benefit from Genomics-Guided Treatment2022 Clinical Cancer Research article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Louisa Rose Hoes, Jade M. van Berge Henegouwen, Hanneke van der Wijngaart, Laurien Joanna Zeverijn, Daphne L. van der Velden, Joris van de Haar, +24 more
89citations -
A toolkit for transposon libraries and functional genomics in intestinal Bacteroidales2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Carlos Geert Pieter Voogdt, Indra Roux, Nicolai Karcher, Afonso Martins Bravo, Lajos Kalmár, Vallo Varik, +4 more
5citations