Mapping single-cell data to reference atlases by transfer learning

• The Human Pancreas Cell Atlas defines a healthy reference framework for disease contextualization and translational benchmarking

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics

  0

  citations
• Advancing Cardiovascular Research With Single-Cell and Spatial Transcriptomics

  2026 Circulation Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics

  12

  citations
• Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasion

  2024 iScience article Medicine Cancer Immunotherapy and Biomarkers Open access

  16

  citations
• Neural Network-Based Filter Design for Compressive Raman Classification of Cells

  2024 Journal of Chemical Information and Modeling article Biochemistry, Genetics and Molecular Biology Spectroscopy Techniques in Biomedical and Chemical Research Open access

  1

  citations
• Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasion

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access

  0

  citations
• Comparative transcriptomics reveals human-specific cortical features

  2023 Science article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  209

  citations
• Single-cell reference mapping to construct and extend cell-type hierarchies

  2023 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  43

  citations
• A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery

  2023 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  38

  citations
• MASI enables fast model-free standardization and integration of single-cell transcriptomics data

  2023 Communications Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  4

  citations
• Best practices for single-cell analysis across modalities

  2023 Nature Reviews Genetics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 7 patents

  1,043

  citations
• ERS International Congress 2022: highlights from the Basic and Translational Science Assembly

  2023 ERJ Open Research article Medicine Asthma and respiratory diseases Open access

  7

  citations
• Fast model-free standardization and integration of single-cell transcriptomics data

  2023 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Guidelines for mouse and human DC functional assays

  2022 European Journal of Immunology article Immunology and Microbiology Immunotherapy and Immune Responses Open access

  17

  citations
• Single-cell reference mapping to construct and extend cell-type hierarchies

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  7

  citations
• A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  5

  citations
• Fast model-free standardization and integration of single-cell transcriptomics data

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations

16 results