February 25, 2021 article Open access ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis Nature Genetics DOI: 10.1038/s41588-021-00790-6 Full text (OA) OpenAlex Authors 0 Author list not loaded yet. Cited by 24 stored of 1,544 Search Sort Most cited Newest Oldest Patent citations Title Any typearticle review book-chapter conference-paper preprint dissertation book dataset other Any fieldAgricultural and Biological Sciences Arts and Humanities Biochemistry, Genetics and Molecular Biology Business, Management and Accounting Chemical Engineering Chemistry Computer Science Decision Sciences Dentistry Earth and Planetary Sciences Economics, Econometrics and Finance Energy Engineering Environmental Science Health Professions Immunology and Microbiology Materials Science Mathematics Medicine Neuroscience Nursing Pharmacology, Toxicology and Pharmaceutics Physics and Astronomy Psychology Social Sciences Veterinary Open access Somatic mutations reveal the ontogeny of microglia in human ageing 2026 Nature article Neuroscience Neuroinflammation and Neurodegeneration Mechanisms 4 citations An integrated multimodal pan-organ atlas of the female reproductive system across the lifespan contextualises gynaecological pathologies 2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 0 citations Multimodal single-cell analysis uncovers transcription factor networks underlying T-cell aging 2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 0 citations PHLOWER leverages single-cell multimodal data to infer complex, multi-branching cell differentiation trajectories 2025 Nature Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 9 citations Deciphering the complex clonal heterogeneity of polycythemia vera and the response to interferon alfa 2025 Blood Advances article Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access 2 citations PHLOWER - Single cell trajectory analysis using Hodge Decomposition 2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 0 citations Single-cell multiome uncovers differences in glycogen metabolism underlying species-specific speed of development 2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access 1 citations MMR vaccination induces trained immunity via functional and metabolic reprogramming of γδ T cells 2024 Journal of Clinical Investigation article Immunology and Microbiology Immune responses and vaccinations Open access 64 citations Mapping cardiac remodeling in chronic kidney disease 2023 Science Advances article Medicine Cardiac Fibrosis and Remodeling Open access 25 citations Deciphering the complex clonal heterogeneity of polycythemia vera and the response to interferon alpha 2023 Research Square preprint Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access 2 citations Multi-ancestry genome-wide study identifies effector genes and druggable pathways for coronary artery calcification 2023 Nature Genetics article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access 123 citations Epigenetic memory of coronavirus infection in innate immune cells and their progenitors 2023 Cell article Immunology and Microbiology Immune responses and vaccinations Open access 301 citations Defining cardiac functional recovery in end-stage heart failure at single-cell resolution 2023 Nature Cardiovascular Research article Medicine Cardiac Fibrosis and Remodeling Open access 79 citations Best practices for single-cell analysis across modalities 2023 Nature Reviews Genetics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 7 patents 1,043 citations Next-Generation Morphometry for pathomics-data mining in histopathology 2023 Nature Communications article Computer Science AI in cancer detection Open access 141 citations scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference 2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access cited by 1 patent 41 citations MMR vaccination induces a trained immunity program characterized by functional and metabolic reprogramming of γδ T cells 2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immune responses and vaccinations 4 citations Defining Cardiac Recovery at Single Cell Resolution 2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cardiac Fibrosis and Remodeling Open access 6 citations scMEGA: Single-cell Multiomic Enhancer-based Gene Regulatory Network Inference 2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access 0 citations Spatial multi-omic map of human myocardial infarction 2022 Nature article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 764 citations 1–20 of 24 Page 1 / 2 Next → References 0